RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 ATL3Q6DD88 541 aa7.72□□□□□ -1.17
ZNF540-201ENST00000316433 TMX3Q96JJ7 454 aa7.72□□□□□ -1.17
ZNF540-201ENST00000316433 ANKRD65E5RJM6 399 aa7.71□□□□□ -1.17
ZNF540-201ENST00000316433 HIP1O00291 1037 aa7.71□□□□□ -1.17
ZNF540-201ENST00000316433 CASTP20810 708 aaKnown RBP7.71□□□□□ -1.17
ZNF540-201ENST00000316433 RWDD2BP57060 319 aa7.71□□□□□ -1.17
ZNF540-201ENST00000316433 FOXD4L5Q5VV16 416 aaPredicted RBP7.71□□□□□ -1.17
ZNF540-201ENST00000316433 CCDC30Q5VVM6 783 aa7.71□□□□□ -1.17
ZNF540-201ENST00000316433 ZNF483Q8TF39 744 aaPredicted RBP7.71□□□□□ -1.17
ZNF540-201ENST00000316433 FOXD4L4Q8WXT5 416 aaPredicted RBP7.71□□□□□ -1.17
ZNF540-201ENST00000316433 THOC1Q96FV9 657 aaKnown RBP7.71□□□□□ -1.17
ZNF540-201ENST00000316433 LRRCC1Q9C099 1032 aa7.71□□□□□ -1.17
ZNF540-201ENST00000316433 RGPD2P0DJD1 1756 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 GADD45BO75293 160 aaPredicted RBP7.71□□□□□ -1.18
ZNF540-201ENST00000316433 ALDH1L1O75891 902 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 TUBB4AP04350 444 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 MYBL2P10244 700 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 UBE2HP62256 183 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 GRIK3Q13003 919 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 PLEKHO1Q53GL0 409 aaPredicted RBP7.71□□□□□ -1.18
ZNF540-201ENST00000316433 VPS53Q5VIR6 699 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 CPLX2Q6PUV4 134 aaKnown RBP7.71□□□□□ -1.18
ZNF540-201ENST00000316433 KAT2BQ92831 832 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 SUDS3Q9H7L9 328 aaPredicted RBP7.71□□□□□ -1.18
ZNF540-201ENST00000316433 EMILIN1Q9Y6C2 1016 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 LRP5O75197 1615 aa7.71□□□□□ -1.18
ZNF540-201ENST00000316433 AFDNP55196 1824 aaKnown RBP7.71□□□□□ -1.18
ZNF540-201ENST00000316433 ERLIN2O94905 339 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 NEFHP12036 1026 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 MX1P20591 662 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 KCNV1Q6PIU1 500 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 TSHZ1Q6ZSZ6 1077 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 PI4K2BQ8TCG2 481 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 DCCP43146 1447 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 TIAM2Q8IVF5 1701 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 MED23Q9ULK4 1368 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 SASH3O75995 380 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 RAPGEF3O95398 923 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 TBC1D8O95759 1140 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 EIF5P55010 431 aaKnown RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 N4BP2L2Q92802 583 aaPredicted RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 JPH2Q9BR39 696 aaPredicted RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 L2HGDHQ9H9P8 463 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 SPATS2LQ9NUQ6 558 aaKnown RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 MCM8Q9UJA3 840 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 ANAPC4Q9UJX5 808 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 RREB1Q92766 1687 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 NPM3O75607 178 aaKnown RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 SEC31AO94979 1220 aaKnown RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 CCNHP51946 323 aaPredicted RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 CRYMQ14894 314 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 NEUROD2Q15784 382 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 LRRC31Q6UY01 552 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 RINLQ6ZS11 566 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 TRIM74Q86UV6 250 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 TRIM73Q86UV7 250 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 NME9Q86XW9 330 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 DRC7Q8IY82 874 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 CTCFLQ8NI51 663 aaPredicted RBP7.7□□□□□ -1.18
ZNF540-201ENST00000316433 FAM107BQ9H098 131 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 KDM4CQ9H3R0 1056 aa7.7□□□□□ -1.18
ZNF540-201ENST00000316433 LRP6O75581 1613 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 ABCC12Q96J65 1359 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 C4AP0C0L4 1744 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 C4BP0C0L5 1744 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 EIF3JO75822 258 aaKnown RBP7.69□□□□□ -1.18
ZNF540-201ENST00000316433 PSMD2Q13200 908 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 TMTC2Q8N394 836 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 CCDC34Q96HJ3 373 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 LSG1Q9H089 658 aaKnown RBP7.69□□□□□ -1.18
ZNF540-201ENST00000316433 ORC3Q9UBD5 711 aaPredicted RBP7.69□□□□□ -1.18
ZNF540-201ENST00000316433 MAP3K19Q56UN5 1328 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 MAP3K15Q6ZN16 1313 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 USP27XA6NNY8 438 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 SMARCA5O60264 1052 aaPredicted RBP7.69□□□□□ -1.18
ZNF540-201ENST00000316433 NF2P35240 595 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 ICA1Q05084 483 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 SCRN1Q12765 414 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 SETDB1Q15047 1291 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 SARM1Q6SZW1 724 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 ZSWIM6Q9HCJ5 1215 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 LAMB2P55268 1798 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 MYH7P12883 1935 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 PLCH1Q4KWH8 1693 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 ZNF831Q5JPB2 1677 aa7.69□□□□□ -1.18
ZNF540-201ENST00000316433 TCHHQ07283 1943 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 NPHP4O75161 1426 aaPredicted RBP7.68□□□□□ -1.18
ZNF540-201ENST00000316433 FAM163BP0C2L3 166 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 GPTP24298 496 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 SF3A1Q15459 793 aaKnown RBP7.68□□□□□ -1.18
ZNF540-201ENST00000316433 USPL1Q5W0Q7 1092 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 ARMC2Q8NEN0 867 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 CCDC97Q96F63 343 aaPredicted RBP7.68□□□□□ -1.18
ZNF540-201ENST00000316433 NRBP1Q9UHY1 535 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 SMC3Q9UQE7 1217 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 CARMIL3Q8ND23 1372 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 ANKRD36CQ5JPF3 1778 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 SHANK3Q9BYB0 1731 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 NRDCO43847 1150 aa7.68□□□□□ -1.18
ZNF540-201ENST00000316433 RPS6KA3P51812 740 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms