RNA–Protein interactions for RNA: ENST00000310301.8

VPS41-202, Transcript of VPS41, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS41, Length 5,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-202ENST00000310301 TMC4Q7Z404 712 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 USP5P45974 858 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 HLTFQ14527 1009 aaKnown RBP eCLIP9.41□□□□□ -0.9
VPS41-202ENST00000310301 DALRD3Q5D0E6 543 aaKnown RBP9.41□□□□□ -0.9
VPS41-202ENST00000310301 SPATA24Q86W54 205 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 GDPD2Q9HCC8 539 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 CABP5Q9NP86 173 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 MAP3K2Q9Y2U5 619 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 CRB1P82279 1406 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 CTAGE5O15320 804 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 MAP3K12Q12852 859 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 AACSQ86V21 672 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 DNAJC10Q8IXB1 793 aa9.41□□□□□ -0.9
VPS41-202ENST00000310301 TCIRG1Q13488 830 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 CEP131Q9UPN4 1083 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 USO1O60763 962 aaKnown RBP9.4□□□□□ -0.9
VPS41-202ENST00000310301 IGSF3O75054 1194 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 BAG4O95429 457 aaKnown RBP9.4□□□□□ -0.9
VPS41-202ENST00000310301 STAMBPO95630 424 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 FLIIQ13045 1269 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 CDC42BPGQ6DT37 1551 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 BMP2KQ9NSY1 1161 aaPredicted RBP9.4□□□□□ -0.9
VPS41-202ENST00000310301 GSTTP1A0A1W2PQM5 241 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 ALDH1L1O75891 902 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 TXNRD1Q16881 649 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 ERBB4Q15303 1308 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 CCDC171Q6TFL3 1326 aa9.4□□□□□ -0.9
VPS41-202ENST00000310301 GRIPAP1Q4V328 841 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 FKBP15Q5T1M5 1219 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 PANK2Q9BZ23 570 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 IL1RAPL2Q9NP60 686 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 POLR3DP05423 398 aaPredicted RBP9.4□□□□□ -0.91
VPS41-202ENST00000310301 UQCRFS1P1P0C7P4 283 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 R3HDM1Q15032 1099 aaKnown RBP9.4□□□□□ -0.91
VPS41-202ENST00000310301 FAM182BQ5T319 152 aa9.4□□□□□ -0.91
VPS41-202ENST00000310301 CCDC12Q8WUD4 166 aaPredicted RBP9.4□□□□□ -0.91
VPS41-202ENST00000310301 GOLGA6L9A6NEM1 432 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 ATP5J2-PTCD1G3V325 749 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 HSF2BPO75031 334 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 KLHL40Q2TBA0 621 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 KIDINS220Q9ULH0 1771 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 ALKQ9UM73 1620 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 IRS4O14654 1257 aaPredicted RBP9.39□□□□□ -0.91
VPS41-202ENST00000310301 YEATS4O95619 227 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 GNG11P61952 73 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 STX1AQ16623 288 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 LRSAM1Q6UWE0 723 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 KSR2Q6VAB6 950 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 CACNA2D4Q7Z3S7 1137 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 AIDAQ96BJ3 306 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 NAA15Q9BXJ9 866 aaKnown RBP9.39□□□□□ -0.91
VPS41-202ENST00000310301 UBE3BQ7Z3V4 1068 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 TMEM57Q8N5G2 664 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 WASF1Q92558 559 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 MPHOSPH6Q99547 160 aaKnown RBP9.39□□□□□ -0.91
VPS41-202ENST00000310301 DDX19AQ9NUU7 478 aaKnown RBP9.39□□□□□ -0.91
VPS41-202ENST00000310301 MAST3O60307 1309 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 SPATA31D1Q6ZQQ2 1576 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 WWC2Q6AWC2 1192 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 ARFGAP3Q9NP61 516 aa9.39□□□□□ -0.91
VPS41-202ENST00000310301 DDX21Q9NR30 783 aaKnown RBP eCLIP9.39□□□□□ -0.91
VPS41-202ENST00000310301 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 FKBP4Q02790 459 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS41-202ENST00000310301 EAPPQ56P03 285 aaPredicted RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 PIM2Q9P1W9 311 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 GGA1Q9UJY5 639 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 PRR36Q9H6K5 1346 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 UNC13BO14795 1591 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 MYO3AQ8NEV4 1616 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 PSDA5PKW4 1024 aaPredicted RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 TDO2P48775 406 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 TNIP1Q15025 636 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 C20orf194Q5TEA3 1177 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 NUTM1Q86Y26 1132 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 RPAP2Q8IXW5 612 aaPredicted RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 SMAP1Q8IYB5 467 aaPredicted RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 C10orf67Q8IYJ2 551 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 CEP112Q8N8E3 955 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 PRPF40BQ6NWY9 871 aaKnown RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 CCDC150Q8NCX0 1101 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 FEZ1Q99689 392 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 CAPN2P17655 700 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 MCM6Q14566 821 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 CEP57Q86XR8 500 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 MATR3P43243 847 aaKnown RBP eCLIP9.38□□□□□ -0.91
VPS41-202ENST00000310301 TTF1Q15361 905 aaPredicted RBP9.38□□□□□ -0.91
VPS41-202ENST00000310301 ALS2CR12Q96Q35 445 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 CTNNA3Q9UI47 895 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 TULP4Q9NRJ4 1543 aa9.38□□□□□ -0.91
VPS41-202ENST00000310301 SLFN5Q08AF3 891 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 RBM26Q5T8P6 1007 aaKnown RBP9.37□□□□□ -0.91
VPS41-202ENST00000310301 NPC1L1Q9UHC9 1359 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 BIN1O00499 593 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 HCLS1P14317 486 aaPredicted RBP9.37□□□□□ -0.91
VPS41-202ENST00000310301 PLCG2P16885 1265 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 CETN2P41208 172 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 PPM1EQ8WY54 764 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 PALLDQ8WX93 1383 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 SPATA31A1Q5TZJ5 1347 aa9.37□□□□□ -0.91
VPS41-202ENST00000310301 PI4KAP2A4QPH2 592 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms