RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 DIXDC1Q155Q3 683 aa18.3■□□□□ 0.52
SSRP1-202ENST00000293880 ZSCAN16Q9H4T2 348 aaPredicted RBP18.3■□□□□ 0.52
SSRP1-202ENST00000293880 ERCC3P19447 782 aa18.3■□□□□ 0.52
SSRP1-202ENST00000293880 STXBP4Q6ZWJ1 553 aa18.3■□□□□ 0.52
SSRP1-202ENST00000293880 IFNKQ9P0W0 207 aa18.3■□□□□ 0.52
SSRP1-202ENST00000293880 CHPF2Q9P2E5 772 aa18.3■□□□□ 0.52
SSRP1-202ENST00000293880 HGSO14964 777 aaPredicted RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 ANKS4BQ8N8V4 417 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 CTAGE1Q96RT6 745 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 ZBTB43O43298 467 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 SLU7O95391 586 aaKnown RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 APOBRQ0VD83 1088 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 MEIS3Q99687 375 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 RNASE9P60153 205 aaKnown RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 TYRO3Q06418 890 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 RTN1Q16799 776 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP18.29■□□□□ 0.522e-8■□□□□ 9.9
SSRP1-202ENST00000293880 RFC1P35251 1148 aaPredicted RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 ZGPATQ8N5A5 531 aaKnown RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 CCDC94Q9BW85 323 aaPredicted RBP18.29■□□□□ 0.52
SSRP1-202ENST00000293880 RASSF4Q9H2L5 321 aa18.29■□□□□ 0.52
SSRP1-202ENST00000293880 DBF4Q9UBU7 674 aaPredicted RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 CTNND2Q9UQB3 1225 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 SSX2IPQ9Y2D8 614 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 UAP1Q16222 522 aaPredicted RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 WDR70Q9NW82 654 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 PA2G4Q9UQ80 394 aaKnown RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 CYP7A1P22680 504 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 ERCC5P28715 1186 aaPredicted RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 TPD52P55327 224 aaPredicted RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 NBPF11Q86T75 865 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 RPUSD2Q8IZ73 545 aaKnown RBP18.28■□□□□ 0.52
SSRP1-202ENST00000293880 KCNH5Q8NCM2 988 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 TACC1O75410 805 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 IQGAP2Q13576 1575 aa18.28■□□□□ 0.52
SSRP1-202ENST00000293880 U2AF2P26368 475 aaKnown RBP eCLIP18.27■□□□□ 0.52
SSRP1-202ENST00000293880 RAB3IL1Q8TBN0 382 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 ESYT1Q9BSJ8 1104 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 FAM184BQ9ULE4 1060 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 AMOTL2Q9Y2J4 779 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 DISP3Q9P2K9 1392 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 ZNF622Q969S3 477 aaKnown RBP eCLIP18.27■□□□□ 0.529e-9■■□□□ 11.4
SSRP1-202ENST00000293880 RSRC1Q96IZ7 334 aaKnown RBP18.27■□□□□ 0.52
SSRP1-202ENST00000293880 FAM200AQ8TCP9 573 aa18.27■□□□□ 0.52
SSRP1-202ENST00000293880 DTNBO60941 627 aa18.27■□□□□ 0.51
SSRP1-202ENST00000293880 C17orf53Q8N3J3 647 aaPredicted RBP18.27■□□□□ 0.51
SSRP1-202ENST00000293880 UTP14AQ9BVJ6 771 aaKnown RBP18.27■□□□□ 0.51
SSRP1-202ENST00000293880 WWC3Q9ULE0 1092 aa18.27■□□□□ 0.51
SSRP1-202ENST00000293880 HPDP32754 393 aaPredicted RBP18.26■□□□□ 0.51
SSRP1-202ENST00000293880 CCT6AP40227 531 aaKnown RBP18.26■□□□□ 0.51
SSRP1-202ENST00000293880 HMG20BQ9P0W2 317 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 JAG2Q9Y219 1238 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 NAPAP54920 295 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 PLCB3Q01970 1234 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 LONRF3Q496Y0 759 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 RHPN1Q8TCX5 695 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 GTPBP4Q9BZE4 634 aaKnown RBP18.26■□□□□ 0.51
SSRP1-202ENST00000293880 SEPT14Q6ZU15 432 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 CPLX4Q7Z7G2 160 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 PPP1R12CQ9BZL4 782 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 TTC21AQ8NDW8 1320 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 CLCN1P35523 988 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 PPP1R7Q15435 360 aa18.26■□□□□ 0.51
SSRP1-202ENST00000293880 SREK1Q8WXA9 508 aaKnown RBP18.26■□□□□ 0.51
SSRP1-202ENST00000293880 CLNS1AP54105 237 aaKnown RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 FERMT1Q9BQL6 677 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 MAGI1Q96QZ7 1491 aaPredicted RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 KIF3CO14782 793 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 CERS3Q8IU89 383 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 SLF2Q8IX21 1173 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 NOL3O60936 208 aaKnown RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 ZKSCAN3Q9BRR0 538 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 CRNKL1Q9BZJ0 848 aaKnown RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 FEZ2Q9UHY8 353 aaPredicted RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 EPRSP07814 1512 aaKnown RBP18.25■□□□□ 0.51
SSRP1-202ENST00000293880 KCNG4Q8TDN1 519 aa18.25■□□□□ 0.51
SSRP1-202ENST00000293880 ZNF608Q9ULD9 1512 aaPredicted RBP18.24■□□□□ 0.51
SSRP1-202ENST00000293880 SMC6Q96SB8 1091 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 CABP5Q9NP86 173 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 ZKSCAN5Q9Y2L8 839 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 PCDHB15Q9Y5E8 787 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 FAM13AO94988 1023 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 AK2P54819 239 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 RAPGEF1Q13905 1077 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 AMOTQ4VCS5 1084 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 CEP120Q8N960 986 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 ABCC11Q96J66 1382 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 PIK3R4Q99570 1358 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 NDC80O14777 642 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 DCAF17Q5H9S7 520 aaPredicted RBP18.24■□□□□ 0.51
SSRP1-202ENST00000293880 MIGA1Q8NAN2 632 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 CCDC61Q9Y6R9 512 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 GRIN2AQ12879 1464 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 TTC36A6NLP5 189 aa18.24■□□□□ 0.51
SSRP1-202ENST00000293880 PYM1Q9BRP8 204 aaKnown RBP18.23■□□□□ 0.51
SSRP1-202ENST00000293880 PKD2L1Q9P0L9 805 aa18.23■□□□□ 0.51
SSRP1-202ENST00000293880 HLA-DOAP06340 250 aa18.23■□□□□ 0.51
SSRP1-202ENST00000293880 C8orf34Q49A92 452 aa18.23■□□□□ 0.51
SSRP1-202ENST00000293880 CCDC65Q8IXS2 484 aa18.23■□□□□ 0.51
SSRP1-202ENST00000293880 PROCA1Q8NCQ7 364 aaPredicted RBP18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms