RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.41□□□□□ -0.265e-6■■■■■ 34.6
CLSTN3-201ENST00000266546 ATP10DQ9P241 1426 aa13.41□□□□□ -0.26
CLSTN3-201ENST00000266546 SYT1P21579 422 aa13.41□□□□□ -0.26
CLSTN3-201ENST00000266546 U2AF2P26368 475 aaKnown RBP eCLIP13.41□□□□□ -0.26
CLSTN3-201ENST00000266546 CHMLP26374 656 aa13.41□□□□□ -0.26
CLSTN3-201ENST00000266546 ERLIN1O75477 346 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 EIF3JO75822 258 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 GSPT1P15170 499 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 PIGBQ92521 554 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 GNL3LQ9NVN8 582 aaKnown RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 V9GYY5 206 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 BRD1O95696 1058 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 STX1AQ16623 288 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 TRPC5Q9UL62 973 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 GADD45BO75293 160 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 IL6STP40189 918 aaPredicted RBP13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 AK2P54819 239 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 ASAP1Q9ULH1 1129 aa13.4□□□□□ -0.26
CLSTN3-201ENST00000266546 SIRT2Q8IXJ6 389 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 CERKQ8TCT0 537 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 PA2G4Q9UQ80 394 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 MED1Q15648 1581 aaPredicted RBP13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 PRAMEF22A3QJZ6 481 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 FKBP4Q02790 459 aaKnown RBP eCLIP13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 CHAMP1Q96JM3 812 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 UTP14AQ9BVJ6 771 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 DNAJC25Q9H1X3 360 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 BCL2L12Q9HB09 334 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 LUZP1Q86V48 1076 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 RUFY1Q96T51 708 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 CDC5LQ99459 802 aaKnown RBP13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 OSBPL3Q9H4L5 887 aa13.39□□□□□ -0.27
CLSTN3-201ENST00000266546 RAD21O60216 631 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 MTX1Q13505 466 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 LDHAL6AQ6ZMR3 332 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 BARGINQ6ZT62 677 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 PCMTD1Q96MG8 357 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 FBXO3Q9UK99 471 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 ZSCAN12O43309 604 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 SKIDA1Q1XH10 827 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 CCDC152Q4G0S7 254 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 SPATA31A1Q5TZJ5 1347 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 MAP3K15Q6ZN16 1313 aa13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 IFIT1P09914 478 aaKnown RBP13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 ZNF397Q8NF99 534 aaPredicted RBP13.38□□□□□ -0.27
CLSTN3-201ENST00000266546 ATP2B1P20020 1258 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 FILIP1LQ4L180 1135 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 TMC6Q7Z403 805 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 FSIP1Q8NA03 581 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 NYXQ9GZU5 481 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 CLSTN1O94985 981 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 SLU7O95391 586 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 POLA2Q14181 598 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 EPB41L2O43491 1005 aaKnown RBP13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 VPS72Q15906 364 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 TTLL7Q6ZT98 887 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 PPFIBP1Q86W92 1011 aa13.37□□□□□ -0.27
CLSTN3-201ENST00000266546 LOC102724428A0A0B4J2F2 783 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 ERVV-1B6SEH8 477 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 PCCAP05165 728 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 SIK1P57059 783 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 GIGYF2Q6Y7W6 1299 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 SMARCE1Q969G3 411 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 ATG3Q9NT62 314 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 IRS4O14654 1257 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 TCEANC2Q96MN5 208 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 STAP2Q9UGK3 403 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 RTCBQ9Y3I0 505 aaKnown RBP13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 KDM6AO15550 1401 aaPredicted RBP13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 H0YHG0 523 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 SLC5A1P13866 664 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 GUCY1B3Q02153 619 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 COPRSQ9NQ92 184 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 USP54Q70EL1 1684 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 SH3TC1Q8TE82 1336 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 RGPD1P0DJD0 1748 aa13.36□□□□□ -0.27
CLSTN3-201ENST00000266546 ADCY9O60503 1353 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 EYA2O00167 538 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 CCAR1Q8IX12 1150 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 CAGE1Q8TC20 777 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 NIP7Q9Y221 180 aaKnown RBP eCLIP13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 PDE8AO60658 829 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 AXDND1Q5T1B0 1012 aaPredicted RBP13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 CCDC102AQ96A19 550 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 DLG5Q8TDM6 1919 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 TOP1P11387 765 aaKnown RBP13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 RFC4P35249 363 aa13.35□□□□□ -0.27
CLSTN3-201ENST00000266546 SPATA31A5Q5VU36 1347 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 SPATA31A7Q8IWB4 1347 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 FAM208AQ9UK61 1670 aaKnown RBP13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 ZBTB38Q8NAP3 1195 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 DACH1Q9UI36 760 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 CTNNA3Q9UI47 895 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 BIN1O00499 593 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 UQCRFS1P1P0C7P4 283 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 SAMD1Q6SPF0 538 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 ZSCAN16Q9H4T2 348 aaPredicted RBP13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 CCDC150Q8NCX0 1101 aa13.34□□□□□ -0.27
CLSTN3-201ENST00000266546 SETDB2Q96T68 719 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms