RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 PAXBP1Q9Y5B6 917 aa13.95□□□□□ -0.18
USHBP1-201ENST00000252597 GOLGA8BA8MQT2 603 aa13.95□□□□□ -0.18
USHBP1-201ENST00000252597 STOX1Q6ZVD7 989 aa13.95□□□□□ -0.18
USHBP1-201ENST00000252597 TDRD7Q8NHU6 1098 aaKnown RBP13.95□□□□□ -0.18
USHBP1-201ENST00000252597 CHMP4AQ9BY43 222 aa13.95□□□□□ -0.18
USHBP1-201ENST00000252597 GTPBP4Q9BZE4 634 aaKnown RBP13.95□□□□□ -0.18
USHBP1-201ENST00000252597 OGFRQ9NZT2 677 aa13.95□□□□□ -0.18
USHBP1-201ENST00000252597 U3KPZ7 1027 aaPredicted RBP13.95□□□□□ -0.18
USHBP1-201ENST00000252597 IFIT1P09914 478 aaKnown RBP13.94□□□□□ -0.18
USHBP1-201ENST00000252597 GTF2F1P35269 517 aaKnown RBP eCLIP13.94□□□□□ -0.18
USHBP1-201ENST00000252597 NDUFA8P51970 172 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 RALYLQ86SE5 291 aaKnown RBP13.94□□□□□ -0.18
USHBP1-201ENST00000252597 IP6K1Q92551 441 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 ZNF496Q96IT1 587 aaPredicted RBP13.94□□□□□ -0.18
USHBP1-201ENST00000252597 ORC3Q9UBD5 711 aaPredicted RBP13.94□□□□□ -0.18
USHBP1-201ENST00000252597 TPM4P67936 248 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 GCKRQ14397 625 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 KMT5BQ4FZB7 885 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 FBXO38Q6PIJ6 1188 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 PLA2G4DQ86XP0 818 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 CLIC4Q9Y696 253 aa13.94□□□□□ -0.18
USHBP1-201ENST00000252597 KLF18A0A0U1RQI7 1052 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 SLC3A2P08195 630 aaKnown RBP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 LRRN4CLQ8ND94 238 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 CHD2O14647 1828 aaKnown RBP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 ARHGAP29Q52LW3 1261 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 DHX32Q7L7V1 743 aaKnown RBP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 AIFM3Q96NN9 605 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 HMG20BQ9P0W2 317 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 CTNNA3Q9UI47 895 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 NALCNQ8IZF0 1738 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 PIK3C2AO00443 1686 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 NEURL1BA8MQ27 555 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 GCP02774 474 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 ATP1A3P13637 1013 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 RRP12Q5JTH9 1297 aaKnown RBP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 NFXL1Q6ZNB6 911 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 CPLX3Q8WVH0 158 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 MRPS27Q92552 414 aaKnown RBP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 DDX21Q9NR30 783 aaKnown RBP eCLIP13.93□□□□□ -0.18
USHBP1-201ENST00000252597 PCDHA7Q9UN72 937 aa13.93□□□□□ -0.18
USHBP1-201ENST00000252597 KRT222Q8N1A0 295 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 NSUN7Q8NE18 718 aaKnown RBP13.92□□□□□ -0.18
USHBP1-201ENST00000252597 ZSCAN16Q9H4T2 348 aaPredicted RBP13.92□□□□□ -0.18
USHBP1-201ENST00000252597 MICU3Q86XE3 530 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 MYL10Q9BUA6 226 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 ADGRL3Q9HAR2 1447 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 FMN2Q9NZ56 1722 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 SLU7O95391 586 aaKnown RBP13.92□□□□□ -0.18
USHBP1-201ENST00000252597 FAM160A1Q05DH4 1040 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 PI16Q6UXB8 463 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 ANKRD7Q92527 254 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 UBXN4Q92575 508 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 CCDC34Q96HJ3 373 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 UTP14AQ9BVJ6 771 aaKnown RBP13.92□□□□□ -0.18
USHBP1-201ENST00000252597 KAT6BQ8WYB5 2073 aa13.92□□□□□ -0.18
USHBP1-201ENST00000252597 TEX35Q5T0J7 233 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 PAG1Q9NWQ8 432 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 ELP1O95163 1332 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 KDRP35968 1356 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 ZNF142P52746 1687 aaPredicted RBP13.91□□□□□ -0.18
USHBP1-201ENST00000252597 ZNF790Q6PG37 636 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 AXIN2Q9Y2T1 843 aa13.91□□□□□ -0.18
USHBP1-201ENST00000252597 GOLGB1Q14789 3259 aaKnown RBP13.9□□□□□ -0.18
USHBP1-201ENST00000252597 IQCB1Q15051 598 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 LRRC24Q50LG9 513 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 E7EWF7 191 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 KLHL10Q6JEL2 608 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 ZNF397Q8NF99 534 aaPredicted RBP13.9□□□□□ -0.18
USHBP1-201ENST00000252597 PHKBQ93100 1093 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 BBXQ8WY36 941 aaPredicted RBP13.9□□□□□ -0.18
USHBP1-201ENST00000252597 FEZ1Q99689 392 aa13.9□□□□□ -0.18
USHBP1-201ENST00000252597 EPB41L2O43491 1005 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 IDH1O75874 414 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 SEC31AO94979 1220 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 AEBP2Q6ZN18 517 aaPredicted RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 PUS3Q9BZE2 481 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 SPTLC2O15270 562 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 ATF3P18847 181 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 PTPN12Q05209 780 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 TTC39AQ5SRH9 613 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 CLIC6Q96NY7 704 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 CTIFO43310 598 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 UBASH3AP57075 661 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 KARSQ15046 597 aaKnown RBP13.89□□□□□ -0.19
USHBP1-201ENST00000252597 ZNF827Q17R98 1081 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 CARD6Q9BX69 1037 aa13.89□□□□□ -0.19
USHBP1-201ENST00000252597 CTDNEP1O95476 244 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 CABP4P57796 275 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 AMOTQ4VCS5 1084 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 KRT28Q7Z3Y7 464 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 DHX40Q8IX18 779 aaKnown RBP13.88□□□□□ -0.19
USHBP1-201ENST00000252597 CTAGE5O15320 804 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 PRC1O43663 620 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 PDIA3P30101 505 aaKnown RBP13.88□□□□□ -0.19
USHBP1-201ENST00000252597 TRDNQ13061 729 aa13.88□□□□□ -0.19
USHBP1-201ENST00000252597 UTP14CQ5TAP6 766 aaKnown RBP13.88□□□□□ -0.19
USHBP1-201ENST00000252597 PES1O00541 588 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 HSPD1P10809 573 aaKnown RBP13.87□□□□□ -0.19
USHBP1-201ENST00000252597 ADD1P35611 737 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms