RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 CHMP4CQ96CF2 233 aa19.14■□□□□ 0.65
UBE3D-201ENST00000237186 SCAND2PQ9GZW5 306 aaPredicted RBP19.14■□□□□ 0.65
UBE3D-201ENST00000237186 GREM2Q9H772 168 aa19.14■□□□□ 0.65
UBE3D-201ENST00000237186 CTNNA3Q9UI47 895 aa19.14■□□□□ 0.65
UBE3D-201ENST00000237186 ITGB4P16144 1822 aa19.13■□□□□ 0.65
UBE3D-201ENST00000237186 PDE8AO60658 829 aa19.13■□□□□ 0.65
UBE3D-201ENST00000237186 SCRN1Q12765 414 aa19.13■□□□□ 0.65
UBE3D-201ENST00000237186 TTC6Q86TZ1 520 aa19.13■□□□□ 0.65
UBE3D-201ENST00000237186 VGLL2Q8N8G2 317 aa19.13■□□□□ 0.65
UBE3D-201ENST00000237186 THRAP3Q9Y2W1 955 aaKnown RBP19.13■□□□□ 0.65
UBE3D-201ENST00000237186 JAK2O60674 1132 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 EVCP57679 992 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 SCARF1Q14162 830 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 METTL24Q5JXM2 366 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 APPBP2Q92624 585 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 ZNF274Q96GC6 653 aaPredicted RBP19.12■□□□□ 0.65
UBE3D-201ENST00000237186 CCDC85AQ96PX6 553 aaPredicted RBP19.12■□□□□ 0.65
UBE3D-201ENST00000237186 TRMT112Q9UI30 125 aaKnown RBP19.12■□□□□ 0.65
UBE3D-201ENST00000237186 NRAPQ86VF7 1730 aa19.12■□□□□ 0.65
UBE3D-201ENST00000237186 ZAP70P43403 619 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 RNF214Q8ND24 703 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 FUCA2Q9BTY2 467 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 ZSCAN16Q9H4T2 348 aaPredicted RBP19.11■□□□□ 0.65
UBE3D-201ENST00000237186 SPATA31A1Q5TZJ5 1347 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 FOXP2O15409 715 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 HSP90B1P14625 803 aaKnown RBP19.11■□□□□ 0.65
UBE3D-201ENST00000237186 HMGN5P82970 282 aaKnown RBP19.11■□□□□ 0.65
UBE3D-201ENST00000237186 FERMT3Q86UX7 667 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 DZIP3Q86Y13 1208 aaKnown RBP19.11■□□□□ 0.65
UBE3D-201ENST00000237186 NOL7Q9UMY1 257 aaKnown RBP19.11■□□□□ 0.65
UBE3D-201ENST00000237186 TCHHQ07283 1943 aa19.11■□□□□ 0.65
UBE3D-201ENST00000237186 EIF5P55010 431 aaKnown RBP19.1■□□□□ 0.65
UBE3D-201ENST00000237186 FGD1P98174 961 aa19.1■□□□□ 0.65
UBE3D-201ENST00000237186 NSUN7Q8NE18 718 aaKnown RBP19.1■□□□□ 0.65
UBE3D-201ENST00000237186 PDE8BO95263 885 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 RESTQ13127 1097 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 NAA16Q6N069 864 aaPredicted RBP19.09■□□□□ 0.65
UBE3D-201ENST00000237186 LRRC2Q9BYS8 371 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 CNNM1Q9NRU3 951 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 WNK3Q9BYP7 1800 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 ZSCAN25Q6NSZ9 544 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 SYTL4Q96C24 671 aaPredicted RBP19.09■□□□□ 0.65
UBE3D-201ENST00000237186 KIF3AQ9Y496 699 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 UBN2Q6ZU65 1347 aa19.09■□□□□ 0.65
UBE3D-201ENST00000237186 A0A0G2JLW4 131 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 CTDNEP1O95476 244 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 FGAP02671 866 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 MCAMP43121 646 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 TTF1Q15361 905 aaPredicted RBP19.08■□□□□ 0.65
UBE3D-201ENST00000237186 IMMTQ16891 758 aaKnown RBP19.08■□□□□ 0.65
UBE3D-201ENST00000237186 WASHC4Q2M389 1173 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 FAM173BQ6P4H8 233 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 DDX24Q9GZR7 859 aaKnown RBP eCLIP19.08■□□□□ 0.65
UBE3D-201ENST00000237186 TBC1D2BQ9UPU7 963 aa19.08■□□□□ 0.65
UBE3D-201ENST00000237186 SLIT2O94813 1529 aa19.08■□□□□ 0.64
UBE3D-201ENST00000237186 PDIA3P30101 505 aaKnown RBP19.07■□□□□ 0.64
UBE3D-201ENST00000237186 MCM5P33992 734 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 APOBRQ0VD83 1088 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 SPATA31A5Q5VU36 1347 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 TTLL5Q6EMB2 1281 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 INTS5Q6P9B9 1019 aaKnown RBP19.07■□□□□ 0.64
UBE3D-201ENST00000237186 SPATA31A7Q8IWB4 1347 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 LEO1Q8WVC0 666 aaPredicted RBP19.07■□□□□ 0.64
UBE3D-201ENST00000237186 PUS7LQ9H0K6 701 aaKnown RBP19.07■□□□□ 0.64
UBE3D-201ENST00000237186 SALL1Q9NSC2 1324 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 ADD2P35612 726 aa19.07■□□□□ 0.64
UBE3D-201ENST00000237186 H3BQV1 296 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 FGFR2P21802 821 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 ARID4AP29374 1257 aaPredicted RBP19.06■□□□□ 0.64
UBE3D-201ENST00000237186 UBE3CQ15386 1083 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 IFFO2Q5TF58 517 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 SPATA32Q96LK8 384 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 NWD2Q9ULI1 1742 aa19.06■□□□□ 0.64
UBE3D-201ENST00000237186 MROH5Q6ZUA9 1318 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 WDR19Q8NEZ3 1342 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.05■□□□□ 0.64
UBE3D-201ENST00000237186 UQCRFS1P1P0C7P4 283 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 DDB1Q16531 1140 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 LPIN2Q92539 896 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 CCDC87Q9NVE4 849 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 CCDC39Q9UFE4 941 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 ATRNO75882 1429 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 PTPDC1A2A3K4 754 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 GPAA1O43292 621 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 MSNP26038 577 aaKnown RBP19.05■□□□□ 0.64
UBE3D-201ENST00000237186 ATL3Q6DD88 541 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 GIMAP6Q6P9H5 292 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 PI16Q6UXB8 463 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 CFAP45Q9UL16 551 aa19.05■□□□□ 0.64
UBE3D-201ENST00000237186 ANKRD36CQ5JPF3 1778 aa19.04■□□□□ 0.64
UBE3D-201ENST00000237186 CCDC102BQ68D86 513 aa19.04■□□□□ 0.64
UBE3D-201ENST00000237186 MB21D2Q8IYB1 491 aaPredicted RBP19.04■□□□□ 0.64
UBE3D-201ENST00000237186 DDX11Q96FC9 970 aa19.04■□□□□ 0.64
UBE3D-201ENST00000237186 EIF2AK3Q9NZJ5 1116 aaKnown RBP19.04■□□□□ 0.64
UBE3D-201ENST00000237186 TFIP11Q9UBB9 837 aaKnown RBP19.04■□□□□ 0.64
UBE3D-201ENST00000237186 ZNF500O60304 480 aaPredicted RBP19.03■□□□□ 0.64
UBE3D-201ENST00000237186 ADD1P35611 737 aaKnown RBP19.03■□□□□ 0.64
UBE3D-201ENST00000237186 PUM3Q15397 648 aaKnown RBP19.03■□□□□ 0.64
UBE3D-201ENST00000237186 PARP10Q53GL7 1025 aa19.03■□□□□ 0.64
UBE3D-201ENST00000237186 DDX19AQ9NUU7 478 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms