RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 HOXC9P31274 260 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 USP25Q9UHP3 1055 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 KRT79Q5XKE5 535 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 LRRC45Q96CN5 670 aa21.61■■□□□ 1.05
SMPD3-201ENST00000219334 TTC41PQ6P2S7 1318 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 ASIC1P78348 528 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 ESYT1Q9BSJ8 1104 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 DENND2AQ9ULE3 1009 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 SBNO2Q9Y2G9 1366 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 TRIM75PA6NK02 468 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 ECM2O94769 699 aaPredicted RBP21.6■■□□□ 1.05
SMPD3-201ENST00000219334 LMAN1P49257 510 aa21.6■■□□□ 1.05
SMPD3-201ENST00000219334 GOLGA6L9A6NEM1 432 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 GNA11P29992 359 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 SMC1AQ14683 1233 aaKnown RBP21.59■■□□□ 1.05
SMPD3-201ENST00000219334 SSX2IPQ9Y2D8 614 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 ASXL1Q8IXJ9 1541 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 NMIQ13287 307 aaPredicted RBP21.59■■□□□ 1.05
SMPD3-201ENST00000219334 TMX3Q96JJ7 454 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 PSMA7O14818 248 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 ZNF354CQ86Y25 554 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 SPAG1Q07617 926 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 NUP160Q12769 1436 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 ZSCAN22P10073 491 aaPredicted RBP21.59■■□□□ 1.05
SMPD3-201ENST00000219334 PDCL2Q8N4E4 241 aa21.59■■□□□ 1.05
SMPD3-201ENST00000219334 ABCC10Q5T3U5 1492 aa21.58■■□□□ 1.05
SMPD3-201ENST00000219334 UFL1O94874 794 aa21.58■■□□□ 1.05
SMPD3-201ENST00000219334 TRMT1Q9NXH9 659 aaKnown RBP21.58■■□□□ 1.05
SMPD3-201ENST00000219334 FSD2A1L4K1 749 aa21.58■■□□□ 1.05
SMPD3-201ENST00000219334 GOLGA6L10A0A0M3HER8 536 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 IGHDP01880 384 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 TSNARE1Q96NA8 513 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 PSMD1Q99460 953 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 HOMER2Q9NSB8 354 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 JAG2Q9Y219 1238 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 TFCP2Q12800 502 aa21.58■■□□□ 1.04
SMPD3-201ENST00000219334 CTAGE1Q96RT6 745 aa21.57■■□□□ 1.04
SMPD3-201ENST00000219334 FAM13AO94988 1023 aa21.57■■□□□ 1.04
SMPD3-201ENST00000219334 KIF4AO95239 1232 aa21.57■■□□□ 1.04
SMPD3-201ENST00000219334 EHBP1Q8NDI1 1231 aa21.57■■□□□ 1.04
SMPD3-201ENST00000219334 DDX21Q9NR30 783 aaKnown RBP eCLIP21.57■■□□□ 1.04
SMPD3-201ENST00000219334 BACH1O14867 736 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 TTC16Q8NEE8 873 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 BCCIPQ9P287 314 aaKnown RBP eCLIP21.56■■□□□ 1.04
SMPD3-201ENST00000219334 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP21.56■■□□□ 1.04
SMPD3-201ENST00000219334 SH3TC1Q8TE82 1336 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 TEX11Q8IYF3 940 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 PICK1Q9NRD5 415 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 SYCP2Q9BX26 1530 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 SHTN1A0MZ66 631 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 UBE4AQ14139 1066 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 RAPGEF6Q8TEU7 1601 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 HS2ST1Q7LGA3 356 aa21.56■■□□□ 1.04
SMPD3-201ENST00000219334 MRPS27Q92552 414 aaKnown RBP21.56■■□□□ 1.04
SMPD3-201ENST00000219334 SOS1Q07889 1333 aaPredicted RBP21.55■■□□□ 1.04
SMPD3-201ENST00000219334 GRIPAP1Q4V328 841 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 TMX1Q9H3N1 280 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 KIAA0753Q2KHM9 967 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 JADE2Q9NQC1 790 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 INCENPQ9NQS7 918 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 MRVI1Q9Y6F6 885 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 ABCC1P33527 1531 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 MAP3K19Q56UN5 1328 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 BICRAQ9NZM4 1560 aa21.55■■□□□ 1.04
SMPD3-201ENST00000219334 KRT2P35908 639 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 EIF6P56537 245 aaKnown RBP21.54■■□□□ 1.04
SMPD3-201ENST00000219334 TMOD4Q9NZQ9 345 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 IKBKGQ9Y6K9 419 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 TRAPPC8Q9Y2L5 1435 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 FAM212AQ96EL1 285 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 GGA1Q9UJY5 639 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 YTHDC2Q9H6S0 1430 aaKnown RBP21.54■■□□□ 1.04
SMPD3-201ENST00000219334 KAT6BQ8WYB5 2073 aa21.54■■□□□ 1.04
SMPD3-201ENST00000219334 HIBADHP31937 336 aaKnown RBP21.54■■□□□ 1.04
SMPD3-201ENST00000219334 UHRF1BP1Q6BDS2 1440 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 POTEB2H3BUK9 544 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 TAF12Q16514 161 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 GIGYF2Q6Y7W6 1299 aaKnown RBP21.53■■□□□ 1.04
SMPD3-201ENST00000219334 FAM89AQ96GI7 184 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 PARP1P09874 1014 aaKnown RBP21.53■■□□□ 1.04
SMPD3-201ENST00000219334 MARCKSP29966 332 aaPredicted RBP21.53■■□□□ 1.04
SMPD3-201ENST00000219334 CYLC1P35663 651 aaPredicted RBP21.53■■□□□ 1.04
SMPD3-201ENST00000219334 RAB3GAP1Q15042 981 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 H0YIN7 160 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 LRSAM1Q6UWE0 723 aa21.53■■□□□ 1.04
SMPD3-201ENST00000219334 DHX37Q8IY37 1157 aaKnown RBP21.52■■□□□ 1.04
SMPD3-201ENST00000219334 PLBD2Q8NHP8 589 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 TTC12Q9H892 705 aaPredicted RBP21.52■■□□□ 1.04
SMPD3-201ENST00000219334 MAST3O60307 1309 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 DDX12PQ92771 950 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 NAP1L4Q99733 375 aaKnown RBP21.52■■□□□ 1.04
SMPD3-201ENST00000219334 ZBTB21Q9ULJ3 1066 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 POLR3AO14802 1390 aaPredicted RBP21.52■■□□□ 1.04
SMPD3-201ENST00000219334 SP4Q02446 784 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 ZNF408Q9H9D4 720 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 UBASH3AP57075 661 aa21.52■■□□□ 1.04
SMPD3-201ENST00000219334 BICC1Q9H694 974 aaKnown RBP21.52■■□□□ 1.04
SMPD3-201ENST00000219334 ZNF790Q6PG37 636 aa21.52■■□□□ 1.03
SMPD3-201ENST00000219334 ZFYVE9O95405 1425 aa21.51■■□□□ 1.03
SMPD3-201ENST00000219334 BRDTQ58F21 947 aaPredicted RBP21.51■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 10.7 ms