RNA–Protein interactions for RNA: ENST00000217402.2

CHMP4B-201, Transcript of charged multivesicular body protein 4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP4B, Length 1,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4B-201ENST00000217402 CCDC8Q9H0W5 538 aaPredicted RBP33.52■■■□□ 2.96
CHMP4B-201ENST00000217402 IFIT1P09914 478 aaKnown RBP33.51■■■□□ 2.96
CHMP4B-201ENST00000217402 RTFDC1Q9BY42 306 aaPredicted RBP33.51■■■□□ 2.96
CHMP4B-201ENST00000217402 TLR7Q9NYK1 1049 aaKnown RBP33.51■■■□□ 2.96
CHMP4B-201ENST00000217402 ADORA1P30542 326 aa33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 FKBP4Q02790 459 aaKnown RBP eCLIP33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 PSMD1Q99460 953 aa33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 TAOK3Q9H2K8 898 aa33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 NFKBIEO00221 500 aa33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 IFIT2P09913 472 aaKnown RBP33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 ARHGAP27Q6ZUM4 889 aa33.5■■■□□ 2.95
CHMP4B-201ENST00000217402 FER1L6Q2WGJ9 1857 aa33.49■■■□□ 2.95
CHMP4B-201ENST00000217402 C16orf71Q8IYS4 520 aaPredicted RBP33.49■■■□□ 2.95
CHMP4B-201ENST00000217402 DBNDD2Q9BQY9 259 aa33.49■■■□□ 2.95
CHMP4B-201ENST00000217402 RIMBP2O15034 1052 aa33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 RASSF7Q02833 373 aa33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 TXNRD3Q86VQ6 643 aa33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 SUPT20HQ8NEM7 779 aa33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 XAGE2Q96GT9 111 aa33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 DBNLQ9UJU6 430 aaKnown RBP33.48■■■□□ 2.95
CHMP4B-201ENST00000217402 EYA3Q99504 573 aa33.47■■■□□ 2.95
CHMP4B-201ENST00000217402 ZNF277Q9NRM2 450 aaPredicted RBP33.47■■■□□ 2.95
CHMP4B-201ENST00000217402 MED23Q9ULK4 1368 aa33.47■■■□□ 2.95
CHMP4B-201ENST00000217402 WASHC4Q2M389 1173 aa33.46■■■□□ 2.95
CHMP4B-201ENST00000217402 OTUD7AQ8TE49 926 aaPredicted RBP33.46■■■□□ 2.95
CHMP4B-201ENST00000217402 ARAP2Q8WZ64 1704 aa33.46■■■□□ 2.95
CHMP4B-201ENST00000217402 IRS2Q9Y4H2 1338 aa33.46■■■□□ 2.95
CHMP4B-201ENST00000217402 GYG1P46976 350 aa33.46■■■□□ 2.95
CHMP4B-201ENST00000217402 GORABQ5T7V8 394 aa33.45■■■□□ 2.95
CHMP4B-201ENST00000217402 ZC3H12CQ9C0D7 883 aaKnown RBP33.45■■■□□ 2.95
CHMP4B-201ENST00000217402 AOC3Q16853 763 aa33.44■■■□□ 2.94
CHMP4B-201ENST00000217402 PPIP5K2O43314 1243 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 BCAMP50895 628 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 CAVIN4Q5BKX8 364 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 C15orf52Q6ZUT6 534 aaKnown RBP33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 SKAP1Q86WV1 359 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 LTBP3Q9NS15 1303 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 VPS37DQ86XT2 251 aa33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 FAM84BQ96KN1 310 aaPredicted RBP33.42■■■□□ 2.94
CHMP4B-201ENST00000217402 PDE4AP27815 886 aa33.4■■■□□ 2.94
CHMP4B-201ENST00000217402 PHKA1P46020 1223 aa33.4■■■□□ 2.94
CHMP4B-201ENST00000217402 KIAA2012Q0VF49 1180 aa33.4■■■□□ 2.94
CHMP4B-201ENST00000217402 UTRNP46939 3433 aa33.4■■■□□ 2.94
CHMP4B-201ENST00000217402 HIBADHP31937 336 aaKnown RBP33.39■■■□□ 2.94
CHMP4B-201ENST00000217402 IARSP41252 1262 aaKnown RBP33.39■■■□□ 2.94
CHMP4B-201ENST00000217402 DOK7Q18PE1 504 aa33.39■■■□□ 2.94
CHMP4B-201ENST00000217402 CCDC102BQ68D86 513 aa33.39■■■□□ 2.94
CHMP4B-201ENST00000217402 ZNF804AQ7Z570 1209 aa33.39■■■□□ 2.94
CHMP4B-201ENST00000217402 TSHZ3Q63HK5 1081 aa33.39■■■□□ 2.93
CHMP4B-201ENST00000217402 LARGE2Q8N3Y3 721 aa33.39■■■□□ 2.93
CHMP4B-201ENST00000217402 GRIN3BO60391 1043 aa33.38■■■□□ 2.93
CHMP4B-201ENST00000217402 CCDC158Q5M9N0 1113 aa33.38■■■□□ 2.93
CHMP4B-201ENST00000217402 FBXO33Q7Z6M2 555 aa33.38■■■□□ 2.93
CHMP4B-201ENST00000217402 G3V3G9 751 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 MX1P20591 662 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 PRELPP51888 382 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 TTC39AQ5SRH9 613 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 DCAF8Q5TAQ9 597 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 DBNDD1Q9H9R9 158 aa33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 IQSEC3Q9UPP2 1182 aaPredicted RBP33.37■■■□□ 2.93
CHMP4B-201ENST00000217402 SALL3Q9BXA9 1300 aa33.36■■■□□ 2.93
CHMP4B-201ENST00000217402 GPATCH3Q96I76 525 aa33.35■■■□□ 2.93
CHMP4B-201ENST00000217402 COL4A5P29400 1685 aa33.35■■■□□ 2.93
CHMP4B-201ENST00000217402 VPS33BQ9H267 617 aa33.35■■■□□ 2.93
CHMP4B-201ENST00000217402 COA1Q9GZY4 146 aa33.34■■■□□ 2.93
CHMP4B-201ENST00000217402 CD209Q9NNX6 404 aa33.34■■■□□ 2.93
CHMP4B-201ENST00000217402 ECHDC1Q9NTX5 307 aa33.34■■■□□ 2.93
CHMP4B-201ENST00000217402 PLEKHM2Q8IWE5 1019 aa33.33■■■□□ 2.93
CHMP4B-201ENST00000217402 GNL3LQ9NVN8 582 aaKnown RBP33.33■■■□□ 2.93
CHMP4B-201ENST00000217402 ECE2O60344 883 aa33.32■■■□□ 2.92
CHMP4B-201ENST00000217402 FRAT2O75474 233 aaPredicted RBP33.31■■■□□ 2.92
CHMP4B-201ENST00000217402 LMNB1P20700 586 aa33.31■■■□□ 2.92
CHMP4B-201ENST00000217402 PDE1AP54750 535 aa33.31■■■□□ 2.92
CHMP4B-201ENST00000217402 NIM1KQ8IY84 436 aa33.31■■■□□ 2.92
CHMP4B-201ENST00000217402 RGS3P49796 1198 aa33.31■■■□□ 2.92
CHMP4B-201ENST00000217402 TTC41PQ6P2S7 1318 aa33.3■■■□□ 2.92
CHMP4B-201ENST00000217402 UQCRFS1P1P0C7P4 283 aa33.3■■■□□ 2.92
CHMP4B-201ENST00000217402 ARID4AP29374 1257 aaPredicted RBP33.3■■■□□ 2.92
CHMP4B-201ENST00000217402 SCARF1Q14162 830 aa33.3■■■□□ 2.92
CHMP4B-201ENST00000217402 JDP2Q8WYK2 163 aa33.3■■■□□ 2.92
CHMP4B-201ENST00000217402 IL1R1P14778 569 aa33.29■■■□□ 2.92
CHMP4B-201ENST00000217402 RASGRF1Q13972 1273 aa33.29■■■□□ 2.92
CHMP4B-201ENST00000217402 TDRD7Q8NHU6 1098 aaKnown RBP33.29■■■□□ 2.92
CHMP4B-201ENST00000217402 STAP2Q9UGK3 403 aa33.29■■■□□ 2.92
CHMP4B-201ENST00000217402 DCAF8L1A6NGE4 600 aa33.28■■■□□ 2.92
CHMP4B-201ENST00000217402 PI16Q6UXB8 463 aa33.28■■■□□ 2.92
CHMP4B-201ENST00000217402 JAG2Q9Y219 1238 aa33.28■■■□□ 2.92
CHMP4B-201ENST00000217402 MCAMP43121 646 aa33.28■■■□□ 2.92
CHMP4B-201ENST00000217402 SNRKQ9NRH2 765 aa33.28■■■□□ 2.92
CHMP4B-201ENST00000217402 COL1A1P02452 1464 aaPredicted RBP33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 ATP5JP18859 108 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 PODNQ7Z5L7 613 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 PI4K2BQ8TCG2 481 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 ZNF512BQ96KM6 892 aaPredicted RBP33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 BOLA2Q9H3K6 86 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 RNF181Q9P0P0 153 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 NDUFB9Q9Y6M9 179 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 CCDC88AQ3V6T2 1871 aa33.27■■■□□ 2.92
CHMP4B-201ENST00000217402 CHAF1AQ13111 956 aaPredicted RBP33.26■■■□□ 2.91
CHMP4B-201ENST00000217402 FBXW7Q969H0 707 aa33.26■■■□□ 2.91
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms