RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CMTM5Q96DZ9 223 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 C14orf119Q9NWQ9 140 aa15.94■□□□□ 0.14
CLN3-262ENST00000637699 ANKRD61A6NGH8 418 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 EEF1B2P24534 225 aaKnown RBP15.93■□□□□ 0.14
CLN3-262ENST00000637699 PSME3P61289 254 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 MZT1Q08AG7 82 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 KRT72Q14CN4 511 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 PCK2Q16822 640 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 MICBQ29980 383 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 WDR38Q5JTN6 314 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 SLC35E4Q6ICL7 350 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 CPLX4Q7Z7G2 160 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 CMTM4Q8IZR5 234 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 LY6G5BQ8NDX9 201 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 NPRL2Q8WTW4 380 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 LRRC29Q8WV35 223 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 C7orf34Q96L11 122 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 KCTD14Q9BQ13 255 aaPredicted RBP15.93■□□□□ 0.14
CLN3-262ENST00000637699 ABCD2Q9UBJ2 740 aa15.93■□□□□ 0.14
CLN3-262ENST00000637699 RNASEK-C17orf49H0YIS7 233 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 NPFFO15130 113 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 ALX3O95076 343 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 SLC2A1P11166 492 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 PRDX6P30041 224 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 PYCR1P32322 319 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 PRKXP51817 358 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 KLRD1Q13241 179 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 SLC35F1Q5T1Q4 408 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 METAP1DQ6UB28 335 aaPredicted RBP15.92■□□□□ 0.14
CLN3-262ENST00000637699 DRAM2Q6UX65 266 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 C11orf53Q8IXP5 236 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 PNKDQ8N490 385 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 FAM216BQ8N7L0 139 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 OR8S1Q8NH09 359 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 SEH1LQ96EE3 360 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 FUZQ9BT04 418 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 PPA2Q9H2U2 334 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 KCNG2Q9UJ96 466 aa15.92■□□□□ 0.14
CLN3-262ENST00000637699 TVP23AA6NH52 213 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 PAHP00439 452 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 MUC1P15941 1255 aaPredicted RBP15.91■□□□□ 0.14
CLN3-262ENST00000637699 OTX1P32242 354 aaPredicted RBP15.91■□□□□ 0.14
CLN3-262ENST00000637699 GRK5P34947 590 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 GUCA2AQ02747 115 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 IKZF1Q13422 519 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 Q6ZTK2 550 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 WDR86Q86TI4 376 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 GALNT4Q8N4A0 578 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 FAM86B1Q8N7N1 296 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 DHRS1Q96LJ7 313 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 COPS4Q9BT78 406 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 RNPEPL1Q9HAU8 725 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 SIGLEC9Q9Y336 463 aa15.91■□□□□ 0.14
CLN3-262ENST00000637699 MEIOCA2RUB1 952 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 ANKRD30BLA7E2S9 258 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 NDUFAB1O14561 156 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 ACOT8O14734 319 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 NDUFB3O43676 98 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 GABRA5P31644 462 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 GNGT1P63211 74 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 CSNK2BP67870 215 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 KHDRBS1Q07666 443 aaKnown RBP eCLIP15.9■□□□□ 0.14
CLN3-262ENST00000637699 TAF13Q15543 124 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 FAM189A2Q15884 450 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 LYPD4Q6UWN0 246 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 SLC36A1Q7Z2H8 476 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 DPY19L4Q7Z388 723 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 DCXRQ7Z4W1 244 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 RNF148Q8N7C7 305 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 Q8N7P7 452 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 C11orf44Q8N8P7 122 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 PROKR2Q8NFJ6 384 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 OR5T2Q8NGG2 359 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 CENPMQ9NSP4 180 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 FBLN5Q9UBX5 448 aa15.9■□□□□ 0.14
CLN3-262ENST00000637699 IDH3BO43837 385 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 GADD45GO95257 159 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OPN1MWP04001 364 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OPN1MW2P0DN77 364 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OPN1MW3P0DN78 364 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 PSKH1P11801 424 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 SAA4P35542 130 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 HERPUD1Q15011 391 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 GLYATQ6IB77 296 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 WDR82Q6UXN9 313 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 Q6ZPA2 131 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 PIGWQ7Z7B1 504 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 CYB561A3Q8NBI2 242 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OR1M1Q8NGA1 313 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OR51L1Q8NGJ5 315 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 OR5R1Q8NH85 324 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 ZNRF4Q8WWF5 429 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 H1FXQ92522 213 aaKnown RBP15.89■□□□□ 0.13
CLN3-262ENST00000637699 OPA3Q9H6K4 179 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 SPAG4Q9NPE6 437 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 PRPF19Q9UMS4 504 aaKnown RBP15.89■□□□□ 0.13
CLN3-262ENST00000637699 V9GYQ6 96 aa15.89■□□□□ 0.13
CLN3-262ENST00000637699 PLXNB1O43157 2135 aa15.88■□□□□ 0.13
CLN3-262ENST00000637699 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.88■□□□□ 0.13
CLN3-262ENST00000637699 TBX1O43435 398 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms