RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 ASB5Q8WWX0 329 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PATE1Q8WXA2 126 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 RAB3CQ96E17 227 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ELF4Q99607 663 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMUB1Q9BVT8 246 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 RAB18Q9NP72 206 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SLC22A11Q9NSA0 550 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 WSB2Q9NYS7 404 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DNAJB11Q9UBS4 358 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 COA3Q9Y2R0 106 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 POMT1Q9Y6A1 747 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 BSNQ9UPA5 3926 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 A0A1B0GTI1 187 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C9orf170A2RU37 121 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 LGALS8O00214 317 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PLPP3O14495 311 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TO15178 435 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 GDF9O60383 454 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FADS1O60427 444 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 RAD1O60671 282 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ATG12O94817 140 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 IGHG1P01857 330 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CD59P13987 128 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CD27P26842 260 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MAOBP27338 520 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MAGEB1P43366 347 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FASLGP48023 281 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 EFNB2P52799 333 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SLC37A1P57057 533 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 HNRNPKP61978 463 aaKnown RBP eCLIP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PPIAP62937 165 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZP4Q12836 540 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CHRFAM7AQ494W8 412 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM128Q5BJH2 165 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FNDC7Q5VTL7 733 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DCAF12L2Q5VW00 463 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF585AQ6P3V2 769 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MARCH3Q86UD3 253 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SKA3Q8IX90 412 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 BPIFCQ8NFQ6 507 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 OR10R2Q8NGX6 335 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF519Q8TB69 540 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SAT2Q96F10 170 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 BCL2L14Q9BZR8 327 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SAV1Q9H4B6 383 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FAM60AQ9NP50 221 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MMP26Q9NRE1 261 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM74BQ9NUR3 256 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ALKBH4Q9NXW9 302 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PISDQ9UG56 409 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PURGQ9UJV8 347 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CYP8B1Q9UNU6 501 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 B3GALT5Q9Y2C3 310 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MRPS28Q9Y2Q9 187 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 HEATR5AQ86XA9 2040 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PCDH15Q96QU1 1955 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 LOC100509620A0A075B734 347 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 IGLV1-36A0A0B4J1U3 117 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PIGBOS1A0A0B4J2F0 54 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CPED1A4D0V7 1026 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ANKUB1A6NFN9 424 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 P2RY10O00398 339 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DKK1O94907 266 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 IL2RAP01589 272 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF93P35789 620 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MMP16P51512 607 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 RPP30P78346 268 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 INPP5JQ15735 1006 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF542PQ5EBM4 170 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 THEM4Q5T1C6 240 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 AVPI1Q5T686 147 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PRR22Q8IZ63 422 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 RELL2Q8NC24 303 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 OR10AC1Q8NH08 325 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 DNASE2BQ8WZ79 361 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 AQP3Q92482 292 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 FGGYQ96C11 551 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 MRPS24Q96EL2 167 aaKnown RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SEC22AQ96IW7 307 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TCEAL7Q9BRU2 100 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM59Q9BXS4 323 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 WWTR1Q9GZV5 400 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C1orf123Q9NWV4 160 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 PPP4R1LQ9P1A2 415 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 C19orf25Q9UFG5 118 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-214ENST00000637038 GPR160Q9UJ42 338 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 SH3BGRL2Q9UJC5 107 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 KCNIP3Q9Y2W7 256 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 CSAG2Q9Y5P2 127 aa3.55□□□□□ -1.84
SCN1A-214ENST00000637038 TEX13DA0A0J9YY54 714 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-214ENST00000637038 A0A1B0GTH9 108 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 TMEM218A2RU14 115 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF705EA8MWA4 302 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-214ENST00000637038 ZNF878C9JN71 531 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 HRKO00198 91 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 NUPL2O15504 423 aaKnown RBP3.54□□□□□ -1.84
SCN1A-214ENST00000637038 MPIG6BO95866 241 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 IFNA4P05014 189 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 CRHP06850 196 aa3.54□□□□□ -1.84
SCN1A-214ENST00000637038 ZBTB25P24278 435 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms