RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 POU1F1P28069 291 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 PIN1Q13526 163 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 FHL1Q13642 323 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 MEP1BQ16820 701 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 LHFPL4Q7Z7J7 247 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 CENPVQ7Z7K6 275 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 MKXQ8IYA7 352 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 GJC3Q8NFK1 279 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 OR5D13Q8NGL4 314 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 BPIFA2Q96DR5 249 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 RCHY1Q96PM5 261 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 OR52B2Q96RD2 323 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 ROPN1BQ9BZX4 212 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 ROPN1Q9HAT0 212 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 ELL3Q9HB65 397 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 VSX1Q9NZR4 365 aaPredicted RBP11.67□□□□□ -0.54
CLN3-249ENST00000636685 CORO2BQ9UQ03 480 aa11.67□□□□□ -0.54
CLN3-249ENST00000636685 GGT3PA6NGU5 568 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 VGLL3A8MV65 326 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 F2RL2O00254 374 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 KHDRBS3O75525 346 aaKnown RBP11.66□□□□□ -0.54
CLN3-249ENST00000636685 OR5F1O95221 314 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 ALDOBP05062 364 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 NDUFB7P17568 137 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 ANOS1P23352 680 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 GMFBP60983 142 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 CSNK2BP67870 215 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 ZSCAN26Q16670 478 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 DGUOKQ16854 277 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 STUMQ69YW2 141 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 C10orf99Q6UWK7 81 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 MAVSQ7Z434 540 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 WDR86Q86TI4 376 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 OR2AE1Q8NHA4 323 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 RNPEPL1Q9HAU8 725 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 SNTG1Q9NSN8 517 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 GRHPRQ9UBQ7 328 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 SLC25A10Q9UBX3 287 aaPredicted RBP11.66□□□□□ -0.54
CLN3-249ENST00000636685 ZNF391Q9UJN7 358 aa11.66□□□□□ -0.54
CLN3-249ENST00000636685 FRAS1Q86XX4 4008 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 XKRYO14609 159 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 COX7A1P24310 79 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 GGT2P36268 569 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 ZNF92Q03936 586 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 KCNMB1Q16558 191 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 CYP51A1Q16850 503 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 ATPAF1Q5TC12 328 aaPredicted RBP11.65□□□□□ -0.54
CLN3-249ENST00000636685 WDR82Q6UXN9 313 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 FUNDC1Q8IVP5 155 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 LNX2Q8N448 690 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 OR13C2Q8NGS9 318 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 SLC26A7Q8TE54 656 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 ZBTB9Q96C00 473 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 C12orf43Q96C57 262 aaKnown RBP11.65□□□□□ -0.54
CLN3-249ENST00000636685 GAFA1Q96PS6 74 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 MCRIP2Q9BUT9 160 aaKnown RBP11.65□□□□□ -0.54
CLN3-249ENST00000636685 SYT4Q9H2B2 425 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 C14orf119Q9NWQ9 140 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 MRPL15Q9P015 296 aaKnown RBP11.65□□□□□ -0.54
CLN3-249ENST00000636685 ZMAT5Q9UDW3 170 aaKnown RBP11.65□□□□□ -0.54
CLN3-249ENST00000636685 SH3GLB1Q9Y371 365 aa11.65□□□□□ -0.54
CLN3-249ENST00000636685 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP11.64□□□□□ -0.55
CLN3-249ENST00000636685 ERICH4A6NGS2 130 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 AHCYL1O43865 530 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 SDHAP31040 664 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 CRYBA2P53672 197 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 LGALS4P56470 323 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 GNGT1P63211 74 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 IL5RAQ01344 420 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 TRAP1Q12931 704 aaKnown RBP11.64□□□□□ -0.55
CLN3-249ENST00000636685 KRT71Q3SY84 523 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 CFAP77Q6ZQR2 320 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 DPY19L4Q7Z388 723 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 KRT77Q7Z794 578 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 PATL1Q86TB9 770 aaKnown RBP11.64□□□□□ -0.55
CLN3-249ENST00000636685 LINC00346Q8IVM7 164 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 RPS4Y2Q8TD47 263 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 SPDL1Q96EA4 605 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 ZNF570Q96NI8 536 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 ZNF649Q9BS31 505 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 ABCB10Q9NRK6 738 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 HAO2Q9NYQ3 351 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 PITPNC1Q9UKF7 332 aa11.64□□□□□ -0.55
CLN3-249ENST00000636685 BHLHE40O14503 412 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 RAMP3O60896 148 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 CD14P08571 375 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 GRK5P34947 590 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 MDH1P40925 334 aaKnown RBP11.63□□□□□ -0.55
CLN3-249ENST00000636685 SLC9A3P48764 834 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 CENPAP49450 140 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 MZT1Q08AG7 82 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 MPP2Q14168 576 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 SELPLGQ14242 412 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 SNAI3Q3KNW1 292 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 BLOC1S3Q6QNY0 202 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 ZNF788Q6ZQV5 615 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 FAM122BQ7Z309 247 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 OAFQ86UD1 273 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 FAM185AQ8N0U4 392 aa11.63□□□□□ -0.55
CLN3-249ENST00000636685 OR1M1Q8NGA1 313 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms