RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 FAM92AA1XBS5 289 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 C7orf66A4D0T2 115 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CTAGE15A4D2H0 777 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CCDC182A6NF36 153 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF233A6NK53 670 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PDZK1P1A8MUH7 402 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 LOC110117498-PIK3R3F6TDL0 507 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PRAMEF26H0Y7S4 382 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SLC9A3R1O14745 358 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 XPO1O14980 1071 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KMOO15229 486 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CD5LO43866 347 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 AIREO43918 545 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CDC40O60508 579 aaKnown RBP eCLIP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SMPD2O60906 423 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 NOL3O60936 208 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SS18L1O75177 396 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PEX11AO75192 247 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 BANF1O75531 89 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZMPSTE24O75844 475 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SCGNO76038 276 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 LY6HO94772 140 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 GABARAPO95166 117 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 VAMP5O95183 116 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 IGLV3-25P01717 112 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HEXBP07686 556 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 RHOXF2BP0C7M4 288 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 GKN3PP0CG01 181 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PRPS2P11908 318 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CTSEP14091 401 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 FOLR1P15328 257 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PGAM1P18669 254 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TPSB2P20231 275 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HNF1AP20823 631 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PAX7P23759 505 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HTR2AP28223 471 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 LAP3P28838 519 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 IL12AP29459 219 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HOXA6P31267 233 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CCR1P32246 355 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 MDH1P40925 334 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PMELP40967 661 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PRPHP41219 470 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CXCL5P42830 114 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SSR1P43307 286 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CAPZBP47756 277 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TUFMP49411 452 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CYB561P49447 251 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 DUSP3P51452 185 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TDGF1P3P51864 188 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 NDUFA8P51970 172 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF136P52737 540 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 DLX1P56177 255 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TPI1P60174 286 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 RAP1AP62834 184 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 DYNLT1P63172 113 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HMGN5P82970 282 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CBX1P83916 185 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 HMGCS1Q01581 520 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SPIBQ01892 262 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 GNA12Q03113 381 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ACVR1Q04771 509 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 FGL1Q08830 312 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KLHL30Q0D2K2 578 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CDH17Q12864 832 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KLRB1Q12918 225 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 SNTB2Q13425 540 aaKnown RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 EIF4EBP1Q13541 118 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 OR5I1Q13606 314 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF235Q14590 738 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KIAA0087Q14695 138 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TPSAB1Q15661 275 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 STK11Q15831 433 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 NNATQ16517 81 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 DPYSL2Q16555 572 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 GUCA2BQ16661 112 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 DUSP7Q16829 419 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CCSMST1Q4G0I0 132 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 FBXO48Q5FWF7 155 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 KLF17Q5JT82 389 aaPredicted RBP0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 GPRC6AQ5T6X5 926 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 RESP18Q5W5W9 173 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TTC23Q5W5X9 447 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 LRRC66Q68CR7 880 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 FAM71F2Q6NXP2 309 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PLBD1Q6P4A8 553 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CES3Q6UWW8 571 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 FAM151BQ6UXP7 276 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 MBOAT1Q6ZNC8 495 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 C19orf35Q6ZS72 473 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 COX15Q7KZN9 410 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 NLRP9Q7RTR0 991 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PRSS41Q7RTY9 318 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF720Q7Z2F6 126 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZNF546Q86UE3 836 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 CTAGE6Q86UF2 777 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TRIM69Q86WT6 500 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 TRAPPC5Q8IUR0 188 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 PCP2Q8IVA1 136 aa0.66□□□□□ -2.3
SMARCB1-209ENST00000635578 ZDHHC21Q8IVQ6 265 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms