RNA–Protein interactions for RNA: ENST00000629179.1

PNKP-223, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 811 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-223	ENST00000629179	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	C1orf87	Q8N0U7	546 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	MUC20	Q8N307	709 aa	Predicted RBP	11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	RFLNB	Q8N5W9	214 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	OR8B12	Q8NGG6	310 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	OR11L1	Q8NGX0	322 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	ERGIC1	Q969X5	290 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	LYZL4	Q96KX0	146 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	CNN2	Q99439	309 aa	Known RBP	11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	TMEM246	Q9BRR3	403 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	TMPRSS13	Q9BYE2	586 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	NIPAL2	Q9H841	368 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	FN3KRP	Q9HA64	309 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179	PPIAL4A	Q9Y536	164 aa		11.91	□□□□□ -0.5
PNKP-223	ENST00000629179		A0A0G2JMP0	313 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	KIR2DP1	A0A0G2JNF4	349 aa	Predicted RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179		A0A0X1KG70	313 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	SLC22A31	A6NKX4	558 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179		F5H0A9	414 aa	Predicted RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	MAGEB4	O15481	346 aa	Predicted RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	PHF1	O43189	567 aa	Predicted RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	FOXH1	O75593	365 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	PTBP3	O95758	552 aa	Known RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	ALPL	P05186	524 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	WNT2	P09544	360 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	SRSF2	Q01130	221 aa	Known RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	DEGS2	Q6QHC5	323 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	ZNF826P	Q6ZT77	177 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	KLB	Q86Z14	1044 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	SLC35F2	Q8IXU6	374 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	BOLL	Q8N9W6	283 aa	Known RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	SPERT	Q8NA61	448 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	DEFB108B	Q8NET1	73 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	OR4M2	Q8NGB6	313 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	OR8S1	Q8NH09	359 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	ASB17	Q8WXJ9	295 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	PPP1R14A	Q96A00	147 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	OR8B4	Q96RC9	309 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	APOL4	Q9BPW4	351 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	MRO	Q9BYG7	248 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	RGCC	Q9H4X1	137 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	METTL17	Q9H7H0	456 aa	Predicted RBP	11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	ADGRL4	Q9HBW9	690 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	MMP26	Q9NRE1	261 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	C1orf123	Q9NWV4	160 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	RNF7	Q9UBF6	113 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	IKZF2	Q9UKS7	526 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	RHBDD3	Q9Y3P4	386 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	TMEM14A	Q9Y6G1	99 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	CUBN	O60494	3623 aa		11.9	□□□□□ -0.5
PNKP-223	ENST00000629179	LOC105371242	A0A075B767	164 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	TMEM269	A0A1B0GVZ9	245 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179		A6NLC8	198 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	TRAPPC2L	H3BP13	241 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	EI24	O14681	340 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	RPS2	P15880	293 aa	Known RBP	11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ACKR3	P25106	362 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	THBS2	P35442	1172 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	CXCR4	P61073	352 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ROM1	Q03395	351 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	OR8B8	Q15620	311 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ZIK1	Q3SY52	487 aa	Predicted RBP	11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ZNF404	Q494X3	552 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ZNF322	Q6U7Q0	402 aa	Predicted RBP	11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	LYPD2	Q6UXB3	125 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	GID4	Q8IVV7	300 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ZNF679	Q8IYX0	411 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	PLPP7	Q8NBV4	271 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	CSNK2A3	Q8NEV1	391 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	OR51G2	Q8NGK0	314 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	UBE2F	Q969M7	185 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	PAPOLG	Q9BWT3	736 aa	Known RBP	11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	C7orf69	Q9H7B7	122 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	C14orf119	Q9NWQ9	140 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	FAM206A	Q9NX38	181 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	HAO2	Q9NYQ3	351 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	MIOX	Q9UGB7	285 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	METRN	Q9UJH8	293 aa		11.89	□□□□□ -0.51
PNKP-223	ENST00000629179	ACOD1	A6NK06	481 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	RNF212B	A8MTL3	300 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179		J3QLI3	93 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	ZNF254	O75437	659 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	APOL3	O95236	402 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	FSTL3	O95633	263 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	ADRA2C	P18825	462 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	CD80	P33681	288 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	GNAL	P38405	381 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	RIDA	P52758	137 aa	Known RBP	11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	MZT1	Q08AG7	82 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	ESCO2	Q56NI9	601 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	SFRP4	Q6FHJ7	346 aa	Predicted RBP	11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	WDR86	Q86TI4	376 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	C11orf53	Q8IXP5	236 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	C10orf67	Q8IYJ2	551 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	CBR4	Q8N4T8	237 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	OR8J1	Q8NGP2	316 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	PIGC	Q92535	297 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	RAB3IP	Q96QF0	476 aa	Predicted RBP	11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	TBX5	Q99593	518 aa		11.88	□□□□□ -0.51
PNKP-223	ENST00000629179	PBOV1	Q9GZY1	135 aa		11.88	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 87 ms