RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 DCXRQ7Z4W1 244 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PPP1R3BQ86XI6 285 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR5T3Q8NGG3 340 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR9A4Q8NGU2 314 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 MR1Q95460 341 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 MUCL1Q96DR8 90 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 C5orf66Q9H5L9 145 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ATXN7L1Q9ULK2 861 aaPredicted RBP9.64□□□□□ -0.87
UPF3A-212ENST00000619079 KCNIP3Q9Y2W7 256 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 A0A1W2PQF6 199 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 FIGNL2A6NMB9 653 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 TCAPO15273 167 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF264O43296 627 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PTBP3O95758 552 aaKnown RBP9.64□□□□□ -0.87
UPF3A-212ENST00000619079 BPNT1O95861 308 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PMP2P02689 132 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 COL9A1P20849 921 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 S1PR1P21453 382 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 HOXA6P31267 233 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 CAMLGP49069 296 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ENPP2Q13822 863 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 SURF2Q15527 256 aaPredicted RBP9.64□□□□□ -0.87
UPF3A-212ENST00000619079 MESTQ5EB52 335 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 SOHLH1Q5JUK2 328 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 CDPF1Q6NVV7 123 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 LRRC69Q6ZNQ3 347 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 MED25Q71SY5 747 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 C1orf210Q8IVY1 113 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 LRRC18Q8N456 261 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 BHLHE23Q8NDY6 225 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR13C3Q8NGS6 347 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 M1APQ8TC57 530 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 GPBAR1Q8TDU6 330 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ST7LQ8TDW4 575 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 TMEM230Q96A57 120 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 OR10C1Q96KK4 312 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 TIMM29Q9BSF4 260 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 TWSG1Q9GZX9 223 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 ARV1Q9H2C2 271 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 PLEKHA2Q9HB19 425 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 AMDHD2Q9Y303 409 aa9.64□□□□□ -0.87
UPF3A-212ENST00000619079 C4orf47A7E2U8 309 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 TGOLN2O43493 480 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 CSTAP01040 98 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SMIM10L1P0DMW3 83 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 PEBP1P30086 187 aaKnown RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 FCGR2CP31995 323 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 THBS4P35443 961 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF84P51523 738 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 RNF4P78317 190 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SLC35A1P78382 337 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SPOCK1Q08629 439 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 UBE2V2Q15819 145 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF674Q2M3X9 581 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 RPUSD3Q6P087 351 aaKnown RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 PEG10Q86TG7 708 aaKnown RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 CATSPERDQ86XM0 798 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 HIST3H2BBQ8N257 126 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SUMF2Q8NBJ7 301 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 CTHRC1Q96CG8 243 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SMIM10Q96HG1 83 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 AMELYQ99218 206 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 NKX3-1Q99801 234 aaPredicted RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 G6PC3Q9BUM1 346 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 TGIF2Q9GZN2 237 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 DUSP15Q9H1R2 295 aaPredicted RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 C19orf12Q9NSK7 152 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 GSKIPQ9P0R6 139 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SUSD2Q9UGT4 822 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 IGKV1D-42A0A075B6H8 117 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 ZNF726A6NNF4 738 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 FGF17O60258 216 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 NME2P1O60361 137 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 CTSVO60911 334 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 APBB3O95704 486 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 F13BP05160 661 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 RAB4AP20338 218 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 CRABP1P29762 137 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 RPS27P42677 84 aaKnown RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 TMEM33P57088 247 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 BTG2P78543 158 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 MGAT2Q10469 447 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 ANKRD55Q3KP44 614 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 ZCCHC10Q8TBK6 192 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 DOK4Q8TEW6 326 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 NOL4LQ96MY1 436 aaPredicted RBP9.63□□□□□ -0.87
UPF3A-212ENST00000619079 TSPAN32Q96QS1 320 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 TPSD1Q9BZJ3 242 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 MMP25Q9NPA2 562 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 SIRT7Q9NRC8 400 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 PLA2G2EQ9NZK7 142 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 USP34Q70CQ2 3546 aa9.63□□□□□ -0.87
UPF3A-212ENST00000619079 H7C1C5 153 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 PNPP00491 289 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 HLA-DQA2P01906 255 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ISG15P05161 165 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 CHRM2P08172 466 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 ASAH2BP0C7U1 165 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 CLDN6P56747 220 aa9.62□□□□□ -0.87
UPF3A-212ENST00000619079 LSM6P62312 80 aaKnown RBP9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms