RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 CYB5R3P00387 301 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 LIMS3P0CW19 117 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 LIMS4P0CW20 117 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 CRYBB2P43320 205 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 PDLIM4P50479 330 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 IZUMO2Q6UXV1 221 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 SPRYD4Q8WW59 207 aaPredicted RBP11.39□□□□□ -0.59
LINC00540-202ENST00000616974 GCM1Q9NP62 436 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 TMEM14AQ9Y6G1 99 aa11.39□□□□□ -0.59
LINC00540-202ENST00000616974 FBN1P35555 2871 aaKnown RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 LOC390937A0A1W2PQ73 354 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 FAM20BO75063 409 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ADH4P08319 380 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ETV1P50549 477 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 GTF2A1P52655 376 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 WDR38Q5JTN6 314 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR2G6Q5TZ20 316 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 MEDAGQ5VYS4 303 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 MOGAT3Q86VF5 341 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ASB17Q8WXJ9 295 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 RDH5Q92781 318 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 SEH1LQ96EE3 360 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 MEGF10Q96KG7 1140 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 C4orf36Q96KX1 117 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 COG8Q96MW5 612 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 R4GMQ9 66 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 COL6A5A8TX70 2615 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 A0A1B0GWJ7 208 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 DAPL1A0PJW8 107 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 LOC110117498-PIK3R3F6TDL0 507 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 PPIHO43447 177 aaKnown RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 XRCC2O43543 280 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 LALBAP00709 142 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 IGLV3-1P01715 115 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 IGHA1P01876 353 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 FAHP16930 419 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 MMP16P51512 607 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 CSNK2BP67870 215 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR8B8Q15620 311 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 CEP78Q5JTW2 689 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 TTC23Q5W5X9 447 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 C1orf174Q8IYL3 243 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR52H1Q8NGJ2 320 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR51A4Q8NGJ6 313 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 PELI1Q96FA3 418 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ADAT1Q9BUB4 502 aaKnown RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ALG8Q9BVK2 526 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR10A2Q9H208 303 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 METTL17Q9H7H0 456 aaPredicted RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 NIPAL2Q9H841 368 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 TMEM100Q9NV29 134 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 ERVK13-1Q9NX77 482 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 NKIRAS2Q9NYR9 191 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 NUFIP1Q9UHK0 495 aaKnown RBP11.38□□□□□ -0.59
LINC00540-202ENST00000616974 OR52A1Q9UKL2 312 aa11.38□□□□□ -0.59
LINC00540-202ENST00000616974 METTL15A6NJ78 407 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 J3QLW9 94 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 CD55P08174 381 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF19P17023 458 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 GIFP27352 417 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 C21orf33P30042 268 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-202ENST00000616974 THBS2P35442 1172 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 EGR3Q06889 387 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 POU4F2Q12837 409 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 CDONQ4KMG0 1287 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 FAM209AQ5JX71 171 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 DEGS2Q6QHC5 323 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 COMMD2Q86X83 199 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 CATSPERDQ86XM0 798 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 ACBD7Q8N6N7 88 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 OR13G1Q8NGZ3 307 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 FBLIM1Q8WUP2 373 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 HPSE2Q8WWQ2 592 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 GGHQ92820 318 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 PIMREGQ9BSJ6 248 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 CHODLQ9H9P2 273 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 PAK1IP1Q9NWT1 392 aaPredicted RBP11.37□□□□□ -0.59
LINC00540-202ENST00000616974 FRRS1LQ9P0K9 344 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 ZDHHC8Q9ULC8 765 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 WIPI2Q9Y4P8 454 aa11.37□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF850A8MQ14 1090 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 KRT8P05787 483 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 ACHEP22303 614 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 TMEM249Q2WGJ8 235 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 PCGF3Q3KNV8 242 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 PAPOLGQ9BWT3 736 aaKnown RBP11.36□□□□□ -0.59
LINC00540-202ENST00000616974 FAM157AC9JC47 383 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 ZNF254O75437 659 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 MT-ND5P03915 603 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 TUBG1P23258 451 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 SEC61A1P61619 476 aaKnown RBP11.36□□□□□ -0.59
LINC00540-202ENST00000616974 TMED1Q13445 227 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 OR8G1Q15617 311 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 RNF144BQ7Z419 303 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 ELMOD2Q8IZ81 293 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 C8orf59Q8N0T1 100 aaPredicted RBP11.36□□□□□ -0.59
LINC00540-202ENST00000616974 BPIFB6Q8NFQ5 453 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 CLDND2Q8NHS1 167 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 ITPKCQ96DU7 683 aa11.36□□□□□ -0.59
LINC00540-202ENST00000616974 LPAR2Q9HBW0 351 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms