RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 RFPL4BQ6ZWI9 263 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 OR13C9Q8NGT0 318 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 OR5H6Q8NGV6 325 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 S100ZQ8WXG8 99 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 ABRACLQ9P1F3 81 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 PIGLQ9Y2B2 252 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 DIDO1Q9BTC0 2240 aaKnown RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 MEGF11A6BM72 1044 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 TMEM127O75204 238 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 THBS4P35443 961 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 GSK3AP49840 483 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 CLDN12P56749 244 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 GK2Q14410 553 aaPredicted RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 PGAP1Q75T13 922 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 SEMA6DQ8NFY4 1073 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 TRMT10AQ8TBZ6 339 aaKnown RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 SSC4DQ8WTU2 575 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 AKAP1Q92667 903 aaKnown RBP eCLIP12.32□□□□□ -0.44
USP39-220ENST00000613444 NKX3-1Q99801 234 aaPredicted RBP12.32□□□□□ -0.44
USP39-220ENST00000613444 CHST5Q9GZS9 411 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 PLEKHA1Q9HB21 404 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 HMG20AQ9NP66 347 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 TMEM138Q9NPI0 162 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 ELOVL5Q9NYP7 299 aa12.32□□□□□ -0.44
USP39-220ENST00000613444 J3QRK9 145 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 SULT1B1O43704 296 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 CECR9P0C854 216 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 ZNF35P13682 527 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 RAB3AP20336 220 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 BDKRB2P30411 391 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 PPP3R1P63098 170 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 UBE2V2Q15819 145 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 TMEM42Q69YG0 159 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 MZT2AQ6P582 158 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 SEZ6L2Q6UXD5 910 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 UTS2BQ765I0 119 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 RNF144BQ7Z419 303 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 NKAIN3Q8N8D7 197 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 OR52N4Q8NGI2 321 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 SLC25A28Q96A46 364 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 ACTR6Q9GZN1 396 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 LIN7BQ9HAP6 207 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 SPATA2Q9UM82 520 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 V9GYH0 126 aa12.31□□□□□ -0.44
USP39-220ENST00000613444 IGHV1-18A0A0C4DH31 117 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 CCL21O00585 134 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 SLC17A2O00624 439 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 ALX3O95076 343 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 HLXQ14774 488 aaPredicted RBP12.3□□□□□ -0.44
USP39-220ENST00000613444 ZNF846Q147U1 533 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 TAB1Q15750 504 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 C1orf100Q5SVJ3 147 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 CRIP3Q6Q6R5 217 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 LGALS14Q8TCE9 139 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 PP6455Q8WZ26 134 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 WDR12Q9GZL7 423 aaKnown RBP12.3□□□□□ -0.44
USP39-220ENST00000613444 CGGBP1Q9UFW8 167 aaPredicted RBP12.3□□□□□ -0.44
USP39-220ENST00000613444 OR5V1Q9UGF6 321 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 EPG5Q9HCE0 2579 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 J3QW42 95 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 SMPD2O60906 423 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 ELK1P19419 428 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 MAP2K3P46734 347 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 EVX1P49640 407 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 RIPPLY1Q0D2K3 151 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 ST3GAL2Q16842 350 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 GLT8D1Q68CQ7 371 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 KRT74Q7RTS7 529 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 STEAP2Q8NFT2 490 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 SOSTQ9BQB4 213 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 PTTG3PQ9NZH4 202 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 NPAP1Q9NZP6 1156 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 STEAP1Q9UHE8 339 aa12.3□□□□□ -0.44
USP39-220ENST00000613444 EIF4EP06730 217 aaKnown RBP12.29□□□□□ -0.44
USP39-220ENST00000613444 CALCBP10092 127 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 ADORA2A-AS1P86434 159 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 ZNF45Q02386 682 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 DMRTC1Q5HYR2 192 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 SAMD12Q8N8I0 201 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 PPP1R3EQ9H7J1 279 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 PLGRKTQ9HBL7 147 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 CDH20Q9HBT6 801 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 ALDOBP05062 364 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 PRF1P14222 555 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 MALLQ13021 153 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 ZNF79Q15937 498 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 C3orf36Q3SXR2 165 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 SPANXN2Q5MJ10 180 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 C1QTNF12Q5T7M4 302 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 CNIH2Q6PI25 160 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 OR4D6Q8NGJ1 314 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 UBASH3BQ8TF42 649 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 CEP19Q96LK0 163 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 OR51B6Q9H340 312 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 METTL17Q9H7H0 456 aaPredicted RBP12.29□□□□□ -0.44
USP39-220ENST00000613444 CYSLTR2Q9NS75 346 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 CRIM1Q9NZV1 1036 aa12.29□□□□□ -0.44
USP39-220ENST00000613444 ZFYVE26Q68DK2 2539 aa12.28□□□□□ -0.44
USP39-220ENST00000613444 C16orf97H3BN30 126 aa12.28□□□□□ -0.44
USP39-220ENST00000613444 ATXN7O15265 892 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms