RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FAM57BQ71RH2 274 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 DPY19L4Q7Z388 723 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 GCSAMQ8N6F7 178 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 OR6N2Q8NGY6 317 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 FAM71F1Q96KD3 344 aaPredicted RBP14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 CCT8L2Q96SF2 557 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 SLITRK2Q9H156 845 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 TRIM36Q9NQ86 728 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 IL20Q9NYY1 176 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 ONECUT1Q9UBC0 465 aa14.56□□□□□ -0.08
SHKBP1-223ENST00000600552 IGHV1-69DA0A0B4J2H0 117 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 A0A1B0GW55 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DHRS12A0PJE2 317 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 ZNF878C9JN71 531 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 XRCC2O43543 280 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 NDUFA2O43678 99 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 IFNGP01579 166 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 IGHV1-69P01742 117 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L2P0CJ85 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L3P0CJ86 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L4P0CJ87 422 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L5P0CJ88 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L6P0CJ89 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L7P0CJ90 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 OTX1P32242 354 aaPredicted RBP14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 GRK5P34947 590 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 BPIFB3P59826 476 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 BRICD5Q6PL45 260 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4L9Q6RFH8 374 aaPredicted RBP14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 SLC16A9Q7RTY1 509 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 ERI1Q8IV48 349 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 LINC00471Q8N535 108 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 PLPP7Q8NBV4 271 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 SGK3Q96BR1 496 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 SEH1LQ96EE3 360 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 REEP6Q96HR9 211 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 TRIM15Q9C019 465 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 PPP1R3EQ9H7J1 279 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 ACOXLQ9NUZ1 547 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 C1RLQ9NZP8 487 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 DUX4Q9UBX2 424 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 SAMHD1Q9Y3Z3 626 aaKnown RBP14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 TRRAPQ9Y4A5 3859 aa14.55□□□□□ -0.08
SHKBP1-223ENST00000600552 A0A0U1RQK1 487 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 A0A1W2PRD5 423 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 A0A1W2PRF3 423 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 A0A1W2PRM7 423 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 FAM183AA6NL82 134 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 RIIAD1A6NNX1 92 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 TNFRSF13BO14836 293 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 IGHV4-59P01825 116 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 MMP9P14780 707 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 GNALP38405 381 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 SLC15A1P46059 708 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 HMGA2P52926 109 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 GNGT1P63211 74 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 CSNK2BP67870 215 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 IKZF1Q13422 519 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 PDCD1Q15116 288 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 MIDNQ504T8 468 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 OLFML2AQ68BL7 652 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 IQCF1Q8N6M8 205 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 OR2T33Q8NG76 320 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 OR5T2Q8NGG2 359 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 TBC1D15Q8TC07 691 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 PGAM5Q96HS1 289 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 SIRPDQ9H106 197 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 REEP1Q9H902 201 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 NDE1Q9NXR1 346 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 VNN3Q9NY84 501 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 PDP1Q9P0J1 537 aaPredicted RBP14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 ARL2BPQ9Y2Y0 163 aa14.54□□□□□ -0.08
SHKBP1-223ENST00000600552 FCN3O75636 299 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 PTBP3O95758 552 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 SLC25A1P53007 311 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 GRB2P62993 217 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 FAM3AP98173 230 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 RELBQ01201 579 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 PCK2Q16822 640 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 MICBQ29980 383 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 ZNF770Q6IQ21 691 aaPredicted RBP14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 VMO1Q7Z5L0 202 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 WDR86Q86TI4 376 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 FAM216BQ8N7L0 139 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 SSMEM1Q8WWF3 244 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 WFDC12Q8WWY7 111 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 INTS14Q96SY0 518 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 PAPOLGQ9BWT3 736 aaKnown RBP14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 OR51V1Q9H2C8 321 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 PRDM13Q9H4Q3 707 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 OPA3Q9H6K4 179 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 CNTD2Q9H8S5 307 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 SNTG1Q9NSN8 517 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 TAS2R1Q9NYW7 299 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 BAIAP2Q9UQB8 552 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 FAM96BQ9Y3D0 163 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 MMP24Q9Y5R2 645 aa14.53□□□□□ -0.08
SHKBP1-223ENST00000600552 CLPSL1A2RUU4 121 aa14.52□□□□□ -0.09
SHKBP1-223ENST00000600552 B2RBV5 119 aa14.52□□□□□ -0.09
SHKBP1-223ENST00000600552 H3BN98 237 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms