RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 IRF2P14316 349 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 ZFP36P26651 326 aaKnown RBP12.66□□□□□ -0.38
TRIM28-205ENST00000595028 MPPED2Q15777 294 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 ZNF404Q494X3 552 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 FAM201AQ5SY85 155 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 C1orf229Q6ZS94 237 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-205ENST00000595028 TCEANCQ8N8B7 351 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 SPERTQ8NA61 448 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 TMEM163Q8TC26 289 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 PYDC1Q8WXC3 89 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 CNN2Q99439 309 aaKnown RBP12.66□□□□□ -0.38
TRIM28-205ENST00000595028 TEAD3Q99594 435 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 GABARAPL3Q9BY60 117 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 METTL17Q9H7H0 456 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-205ENST00000595028 FN3KRPQ9HA64 309 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 TMEM165Q9HC07 324 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 LRCH1Q9Y2L9 728 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 POLR3KQ9Y2Y1 108 aaPredicted RBP12.66□□□□□ -0.38
TRIM28-205ENST00000595028 LRP12Q9Y561 859 aa12.66□□□□□ -0.38
TRIM28-205ENST00000595028 LOC105371242A0A075B767 164 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-205ENST00000595028 ANKRD30BLA7E2S9 258 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 SPRY1O43609 319 aaPredicted RBP12.65□□□□□ -0.38
TRIM28-205ENST00000595028 RPS2P15880 293 aaKnown RBP12.65□□□□□ -0.38
TRIM28-205ENST00000595028 CPT2P23786 658 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 GSK3AP49840 483 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 EFNB1P98172 346 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 MZT1Q08AG7 82 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 KPNB1Q14974 876 aaKnown RBP12.65□□□□□ -0.38
TRIM28-205ENST00000595028 OR8B8Q15620 311 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 ESCO2Q56NI9 601 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 AADACL4Q5VUY2 407 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 NXNL2Q5VZ03 156 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 C1QL2Q7Z5L3 287 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 BCDIN3DQ7Z5W3 292 aaKnown RBP12.65□□□□□ -0.38
TRIM28-205ENST00000595028 KRT77Q7Z794 578 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 RFLNBQ8N5W9 214 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 PLPP7Q8NBV4 271 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 OR8B12Q8NGG6 310 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 TMEM246Q9BRR3 403 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 COPS3Q9UNS2 423 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 PPIAL4AQ9Y536 164 aa12.65□□□□□ -0.38
TRIM28-205ENST00000595028 MGAM2Q2M2H8 2515 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 SLC22A31A6NKX4 558 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 PRR32B1ATL7 298 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 H3BNX3 289 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 HCCSP53701 268 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 ROM1Q03395 351 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 SCGB2A2Q13296 93 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 KCTD18Q6PI47 426 aaPredicted RBP12.64□□□□□ -0.39
TRIM28-205ENST00000595028 DEGS2Q6QHC5 323 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 MEPCEQ7L2J0 689 aaKnown RBP12.64□□□□□ -0.39
TRIM28-205ENST00000595028 GID4Q8IVV7 300 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 DEFB108BQ8NET1 73 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 CSNK2A3Q8NEV1 391 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 OR8S1Q8NH09 359 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 OR8B4Q96RC9 309 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 IL4I1Q96RQ9 567 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 RBM4BQ9BQ04 359 aaKnown RBP12.64□□□□□ -0.39
TRIM28-205ENST00000595028 PAPOLGQ9BWT3 736 aaKnown RBP12.64□□□□□ -0.39
TRIM28-205ENST00000595028 OSBPL10Q9BXB5 764 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 MROQ9BYG7 248 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 RIBC2Q9H4K1 309 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 ADGRL4Q9HBW9 690 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 MMP26Q9NRE1 261 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 C14orf119Q9NWQ9 140 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 RNF7Q9UBF6 113 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 MIOXQ9UGB7 285 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 OR5V1Q9UGF6 321 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 METRNQ9UJH8 293 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 TMEM14AQ9Y6G1 99 aa12.64□□□□□ -0.39
TRIM28-205ENST00000595028 TCF21O43680 179 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 WNT2P09544 360 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 HOXA4Q00056 320 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-205ENST00000595028 SNCBQ16143 134 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 ZFP1Q6P2D0 407 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 DCDC5Q6ZRR9 648 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 NLRC3Q7RTR2 1065 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 WDR86Q86TI4 376 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 FTMTQ8N4E7 242 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 ASB17Q8WXJ9 295 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 NEIL1Q96FI4 390 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-205ENST00000595028 PKP2Q99959 881 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 SSBP3Q9BWW4 388 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-205ENST00000595028 TTTY10Q9BZA0 68 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 C7orf69Q9H7B7 122 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 C1orf123Q9NWV4 160 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 FAM206AQ9NX38 181 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 H2AFY2Q9P0M6 372 aaPredicted RBP12.63□□□□□ -0.39
TRIM28-205ENST00000595028 OPN4Q9UHM6 478 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 ZNF391Q9UJN7 358 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 RHBDD3Q9Y3P4 386 aa12.63□□□□□ -0.39
TRIM28-205ENST00000595028 A6NLC8 198 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 TRAPPC2LH3BP13 241 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 PSMD9O00233 223 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 EBAG9O00559 213 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 ZNF254O75437 659 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 FSHBP01225 129 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 ZNF12P17014 697 aa12.62□□□□□ -0.39
TRIM28-205ENST00000595028 ADRA2CP18825 462 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms