RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 FOXRED1Q96CU9 486 aaPredicted RBP9.13□□□□□ -0.95
SS18-217ENST00000580958 SNRNP40Q96DI7 357 aaKnown RBP9.13□□□□□ -0.95
SS18-217ENST00000580958 SLX1AQ9BQ83 275 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 C1QTNF5Q9BXJ0 243 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 ASF1BQ9NVP2 202 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 RHBDD3Q9Y3P4 386 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 PCNX1Q96RV3 2341 aa9.13□□□□□ -0.95
SS18-217ENST00000580958 LOC100289279A0A1B0GTE1 492 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 TMEM272A0A1B0GTI8 110 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 A0A1W2PQ09 198 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 LOC390937A0A1W2PQ73 354 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 A0A1W2PR80 420 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ISPDA4D126 451 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 C5orf49A4QMS7 147 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 PRRG2O14669 202 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 XRCC2O43543 280 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 SULT1B1O43704 296 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 MTRF1O75570 445 aaKnown RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 IL2RAP01589 272 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ERCC1P07992 297 aaPredicted RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 HOXD4P09016 255 aaPredicted RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 GLI4P10075 376 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ACKR3P25106 362 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 APLNRP35414 380 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 TIMP3P35625 211 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ART1P52961 327 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ZNF92Q03936 586 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 TAB1Q15750 504 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 EIF2S3LQ2VIR3 472 aaKnown RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 C2orf76Q3KRA6 126 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 C1orf100Q5SVJ3 147 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 PYHIN1Q6K0P9 492 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 Q6ZNX1 250 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 RNF144BQ7Z419 303 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 CXorf67Q86X51 503 aaPredicted RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 LYPD6Q86Y78 171 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 DOLPP1Q86YN1 238 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 GABRG1Q8N1C3 465 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 POC5Q8NA72 575 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 SEMA6DQ8NFY4 1073 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 OR4D6Q8NGJ1 314 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 CHPT1Q8WUD6 406 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 AKAP1Q92667 903 aaKnown RBP eCLIP9.12□□□□□ -0.95
SS18-217ENST00000580958 POM121L2Q96KW2 1035 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 ZFP3Q96NJ6 502 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 SPACA5Q96QH8 159 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 TP63Q9H3D4 680 aaPredicted RBP9.12□□□□□ -0.95
SS18-217ENST00000580958 TMEM138Q9NPI0 162 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 GPR173Q9NS66 373 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 RHBDL2Q9NX52 303 aa9.12□□□□□ -0.95
SS18-217ENST00000580958 IGKV1-9A0A0C4DH69 117 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 hCG_38984A0A1B0GV85 526 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 LINC00854A0A1B0GVQ3 168 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 HCKP08631 526 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 CELA3BP08861 270 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 CEACAM8P31997 349 aaPredicted RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 NR4A2P43354 598 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 MAP2K3P46734 347 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 PITPNBP48739 271 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 GSK3AP49840 483 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 EFNB2P52799 333 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 SCAND1P57086 179 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 FAM3AP98173 230 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 RIPPLY1Q0D2K3 151 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 TNK1Q13470 666 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 TRIM16LQ309B1 348 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 RNASE12Q5GAN4 147 aaKnown RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 TRIQKQ629K1 86 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 BAIAP2L2Q6UXY1 529 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 DCDC5Q6ZRR9 648 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 COLCA1Q6ZS62 124 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 UTS2BQ765I0 119 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 CCDC36Q8IYA8 594 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 Q8N402 240 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 PAQR4Q8N4S7 273 aaPredicted RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 WDR31Q8NA23 367 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 C1orf162Q8NEQ5 155 aaPredicted RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 SLC30A7Q8NEW0 376 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 NPRL2Q8WTW4 380 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 RAB40AQ8WXH6 277 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 PP6455Q8WZ26 134 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 APOBEC3DQ96AK3 386 aaPredicted RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 C10orf35Q96D05 121 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 ZNF75AQ96N20 296 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 SORCS2Q96PQ0 1159 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 ABHD1Q96SE0 405 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 CHST5Q9GZS9 411 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 ABCG5Q9H222 651 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 POFUT1Q9H488 388 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 RGCCQ9H4X1 137 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 METTL17Q9H7H0 456 aaPredicted RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 CNTD2Q9H8S5 307 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 PTTG3PQ9NZH4 202 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 ZNF391Q9UJN7 358 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 MRPS7Q9Y2R9 242 aaKnown RBP9.11□□□□□ -0.95
SS18-217ENST00000580958 ATMQ13315 3056 aa9.11□□□□□ -0.95
SS18-217ENST00000580958 BOD1L1Q8NFC6 3051 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 hCG_2014768A0A024R1R8 64 aa9.1□□□□□ -0.95
SS18-217ENST00000580958 MED19A0JLT2 244 aaPredicted RBP9.1□□□□□ -0.95
SS18-217ENST00000580958 DHRS7CA6NNS2 312 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms