RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 CYB5R3P00387 301 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 PPIAL4FP0DN26 164 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PSKH1P11801 424 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 RPS2P15880 293 aaKnown RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 FSTP19883 344 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 CA6P23280 308 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 CPT2P23786 658 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 DDOSTP39656 456 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 CD200P41217 278 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 NAA10P41227 235 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 DAPP51397 102 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 ZNF121P58317 390 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 APOFQ13790 326 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PTGES3Q15185 160 aaKnown RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 KCNJ8Q15842 424 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 ZNF181Q2M3W8 571 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 GFOD2Q3B7J2 385 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 ESCO2Q56NI9 601 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 DCAF12L2Q5VW00 463 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 LIPNQ5VXI9 398 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 KCTD18Q6PI47 426 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 NLRC3Q7RTR2 1065 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 SLC16A9Q7RTY1 509 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 KRT77Q7Z794 578 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 KLBQ86Z14 1044 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 RFLNBQ8N5W9 214 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 OR56B2PQ8NGI1 322 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 ZNF420Q8TAQ5 688 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 LRTOMTQ8WZ04 291 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 DUS3LQ96G46 650 aaKnown RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 REEP6Q96HR9 211 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 CNN2Q99439 309 aaKnown RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 MROQ9BYG7 248 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 YIPF3Q9GZM5 350 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 RGCCQ9H4X1 137 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 METTL17Q9H7H0 456 aaPredicted RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 NTN4Q9HB63 628 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PATZ1Q9HBE1 687 aaKnown RBP6.82□□□□□ -1.32
VPS53-214ENST00000572607 C14orf119Q9NWQ9 140 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 DCAF16Q9NXF7 216 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 OR5V1Q9UGF6 321 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PPIAL4AQ9Y536 164 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 ORC6Q9Y5N6 252 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 TMEM14AQ9Y6G1 99 aa6.82□□□□□ -1.32
VPS53-214ENST00000572607 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS53-214ENST00000572607 SLC22A31A6NKX4 558 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 A6NLC8 198 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 ANXA2P2A6NMY6 339 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 F8W735 103 aaPredicted RBP6.81□□□□□ -1.32
VPS53-214ENST00000572607 EBAG9O00559 213 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 PHYHO14832 338 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 PHF1O43189 567 aaPredicted RBP6.81□□□□□ -1.32
VPS53-214ENST00000572607 TCF21O43680 179 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 OPRL1P41146 370 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 ACTR3P61158 418 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 LCN2P80188 198 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 ZMYND11Q15326 602 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 PRAMEF6Q5VXH4 476 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 SLX4IPQ5VYV7 408 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 AMIGO2Q86SJ2 522 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 LRRC28Q86X40 367 aaPredicted RBP6.81□□□□□ -1.32
VPS53-214ENST00000572607 GID4Q8IVV7 300 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 CSNK2A3Q8NEV1 391 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 BBS1Q8NFJ9 593 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 ASB17Q8WXJ9 295 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 CENPNQ96H22 339 aaPredicted RBP6.81□□□□□ -1.32
VPS53-214ENST00000572607 SIGLEC11Q96RL6 698 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 MNTQ99583 582 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 OSBPL10Q9BXB5 764 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 KRTAP9-9Q9BYP9 154 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 KRTAP9-4Q9BYQ2 154 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 SEMA6AQ9H2E6 1030 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 TRIM36Q9NQ86 728 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 UFSP2Q9NUQ7 469 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 MIOXQ9UGB7 285 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 ZNF391Q9UJN7 358 aa6.81□□□□□ -1.32
VPS53-214ENST00000572607 PPIAL4CA0A0B4J2A2 164 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 A0A1B0GWJ7 208 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 hCG_1807616A0A1W2PRN6 198 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 SAC3D1A6NKF1 404 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 CEACAM18A8MTB9 384 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ZNF670-ZNF695F2Z2N8 137 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 PRKYO43930 277 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MITFO75030 526 aaPredicted RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 FAM20BO75063 409 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ZNF254O75437 659 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ALX3O95076 343 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ZNF205O95201 554 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 FSTL3O95633 263 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 GRPP07492 148 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MRPL3P09001 348 aaKnown RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 ALOX5APP20292 161 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 GNB2P62879 340 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 FAM3AP98173 230 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 IL5RAQ01344 420 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 MAB21L1Q13394 359 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 OR8B8Q15620 311 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 ZNF829Q3KNS6 432 aaPredicted RBP6.8□□□□□ -1.32
VPS53-214ENST00000572607 NXNL2Q5VZ03 156 aa6.8□□□□□ -1.32
VPS53-214ENST00000572607 KDM4DQ6B0I6 523 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms