RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 C16orf82Q7Z2V1 217 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 PIGZQ86VD9 579 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RNF113BQ8IZP6 322 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 FBXL14Q8N1E6 418 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 BPIFB2Q8N4F0 458 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 HSD17B11Q8NBQ5 300 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZNF114Q8NC26 417 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 LFNGQ8NES3 379 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 GPR32P1Q8NGA4 272 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OR5B17Q8NGF7 314 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OR5L1Q8NGL2 311 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OR51A7Q8NH64 312 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OSR1Q8TAX0 266 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 FNDC8Q8TC99 324 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 TFB1MQ8WVM0 346 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 DYRK2Q92630 601 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 UFD1Q92890 307 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 DNAJC19Q96DA6 116 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 C2orf48Q96LS8 159 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RCHY1Q96PM5 261 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 SDHCQ99643 169 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 URM1Q9BTM9 101 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 TMEM59Q9BXS4 323 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 RAB34Q9BZG1 259 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZBP1Q9H171 429 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 TLNRD1Q9H1K6 362 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 TMEM38AQ9H6F2 299 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 IFT46Q9NQC8 304 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZC4H2Q9NQZ6 224 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 OLFML3Q9NRN5 406 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 SLC17A6Q9P2U8 582 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 GINS2Q9Y248 185 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ERGIC3Q9Y282 383 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 NTNG1Q9Y2I2 539 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 PPP2R2CQ9Y2T4 447 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 KCNIP3Q9Y2W7 256 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 L3MBTL1Q9Y468 752 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZSCAN21Q9Y5A6 473 aaPredicted RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 TENM2Q9NT68 2774 aa2.45□□□□□ -2.02
VPS35-209ENST00000568642 ZNF638Q14966 1978 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 TDRD6O60522 2096 aaKnown RBP2.45□□□□□ -2.02
VPS35-209ENST00000568642 TRAV8-7A0A075B6U6 113 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 MSGN1A6NI15 193 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR5B21A6NL26 309 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF705EA8MWA4 302 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 A8MX80 341 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 IDSB3KWA1 339 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 TRDCB7Z8K6 153 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 FTCDNL1E5RQL4 147 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 F5H5T6 163 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 C15orf65H3BRN8 121 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CXCR6O00574 342 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ACOX3O15254 700 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 BIRC5O15392 142 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF749O43361 778 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ITM2AO43736 263 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 MAGEC1O60732 1142 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CDK2AP2O75956 126 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CALM1P0DP23 149 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CALM2P0DP24 149 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CALM3P0DP25 149 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 H2AFXP16104 143 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 FASP25445 335 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ACRV1P26436 265 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 IFNA8P32881 189 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 RBM34P42696 430 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 AVPR1BP47901 424 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 FGF8P55075 233 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR2B8PP59922 312 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 KRTAP10-11P60412 298 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 SLC35B1P78383 322 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 CD300CQ08708 224 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF154Q13106 437 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 UNC119Q13432 240 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 EIF4EBP2Q13542 120 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 P2RY6Q15077 328 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 RAB35Q15286 201 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF726P1Q15940 193 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 C4orf26Q17RF5 130 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 BSXQ3C1V8 233 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 EIPR1Q53HC9 387 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 ZNF57Q68EA5 555 aaPredicted RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 TMEM42Q69YG0 159 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 IGFL4Q6B9Z1 124 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 TRNP1Q6NT89 227 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 NPSR1Q6W5P4 371 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 RBMS3Q6XE24 437 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 STOX1Q6ZVD7 989 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 COX15Q7KZN9 410 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 THOC6Q86W42 341 aaKnown RBP2.44□□□□□ -2.02
VPS35-209ENST00000568642 C10orf67Q8IYJ2 551 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 SLC22A15Q8IZD6 547 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 LGI4Q8N135 537 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 SLC37A3Q8NCC5 494 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR9Q2Q8NGE9 314 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR1K1Q8NGR3 316 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR10Z1Q8NGY1 313 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 OR6K2Q8NGY2 324 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 DYNC2LI1Q8TCX1 351 aa2.44□□□□□ -2.02
VPS35-209ENST00000568642 HAVCR2Q8TDQ0 301 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms