RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 PRKXP51817 358 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 RPL15P61313 204 aaKnown RBP12.34□□□□□ -0.43
CLN3-236ENST00000568558 TRIM25Q14258 630 aaKnown RBP12.34□□□□□ -0.43
CLN3-236ENST00000568558 MIDNQ504T8 468 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 BRICD5Q6PL45 260 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 BTN2A1Q7KYR7 527 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 SLC37A3Q8NCC5 494 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 OR9Q2Q8NGE9 314 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 OR51L1Q8NGJ5 315 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 DYRK2Q92630 601 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 LHX4Q969G2 390 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 SLAMF6Q96DU3 332 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 KCNJ15Q99712 375 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 BTBD10Q9BSF8 475 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 COPS4Q9BT78 406 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 TRIM15Q9C019 465 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 OPA3Q9H6K4 179 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 C14orf119Q9NWQ9 140 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 IL20Q9NYY1 176 aa12.34□□□□□ -0.43
CLN3-236ENST00000568558 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.33□□□□□ -0.44
CLN3-236ENST00000568558 hCG_1807616A0A1W2PRN6 198 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 DVL1O14640 695 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 ACOT8O14734 319 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 XRCC2O43543 280 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 ECDO95905 644 aaPredicted RBP12.33□□□□□ -0.44
CLN3-236ENST00000568558 LHBP01229 141 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 SPARCP09486 303 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 ENTPD1P49961 510 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 ARF6P62330 175 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 MZT1Q08AG7 82 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 PCK2Q16822 640 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 C11orf91Q3C1V1 193 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 TEX36Q5VZQ5 186 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 DHFR2Q86XF0 187 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 LDLRAD3Q86YD5 345 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 LNX2Q8N448 690 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 OR8D4Q8NGM9 314 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 OR9Q1Q8NGQ5 310 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 TBC1D15Q8TC07 691 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 SPSB4Q96A44 273 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 MUC13Q9H3R2 512 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 KAAG1Q9UBP8 84 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 LYVE1Q9Y5Y7 322 aa12.33□□□□□ -0.44
CLN3-236ENST00000568558 IGHV3OR15-7A0A075B7D8 119 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 A0A0U1RQK1 487 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 ZNF878C9JN71 531 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 GPR137BO60478 399 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 KRT36O76013 467 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 IGHV4-59P01825 116 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 FMO3P31513 532 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 DDOSTP39656 456 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 HMGA2P52926 109 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 KRTAP10-3P60369 221 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 POU4F2Q12837 409 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 CRMP1Q14194 572 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 TAF13Q15543 124 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 RHOUQ7L0Q8 258 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 WDR86Q86TI4 376 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 LINC00471Q8N535 108 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 ZNF511Q8NB15 262 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 ST8SIA4Q92187 359 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 ASB9Q96DX5 294 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 RNPEPL1Q9HAU8 725 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 CENPMQ9NSP4 180 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 VNN3Q9NY84 501 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 RPUSD1Q9UJJ7 312 aaKnown RBP12.32□□□□□ -0.44
CLN3-236ENST00000568558 N6AMT1Q9Y5N5 214 aa12.32□□□□□ -0.44
CLN3-236ENST00000568558 A0A1B0GW55 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 ANKRD30BLA7E2S9 258 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 ZNF593O00488 134 aaPredicted RBP12.31□□□□□ -0.44
CLN3-236ENST00000568558 GYG2O15488 501 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 GYPBP06028 91 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L2P0CJ85 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L3P0CJ86 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L4P0CJ87 422 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L5P0CJ88 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L6P0CJ89 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L7P0CJ90 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 MAGEA2P43356 314 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 FAM3AP98173 230 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 BNIP1Q12981 228 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 CDONQ4KMG0 1287 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 TEX30Q5JUR7 227 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 ZNF770Q6IQ21 691 aaPredicted RBP12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4L9Q6RFH8 374 aaPredicted RBP12.31□□□□□ -0.44
CLN3-236ENST00000568558 RASSF6Q6ZTQ3 369 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 SLC16A9Q7RTY1 509 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 VMO1Q7Z5L0 202 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 C11orf53Q8IXP5 236 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 FGFRL1Q8N441 504 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 SCCPDHQ8NBX0 429 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 OR8S1Q8NH09 359 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 LRRC29Q8WV35 223 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 NMNAT2Q9BZQ4 307 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 TBC1D23Q9NUY8 699 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 DUX4Q9UBX2 424 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 RNF114Q9Y508 228 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 KPTNQ9Y664 436 aa12.31□□□□□ -0.44
CLN3-236ENST00000568558 A0A1B0GVI7 797 aa12.3□□□□□ -0.44
CLN3-236ENST00000568558 DHRS12A0PJE2 317 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms