RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, human

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-223	ENST00000568488	TCRBV4S1A1T	A0A5B7	111 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	SOCS2	O14508	198 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	SDHA	P31040	664 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	MDH1	P40925	334 aa	Known RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	VDAC2	P45880	294 aa	Predicted RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	GPR4	P46093	362 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	VSNL1	P62760	191 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	CD83	Q01151	205 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	CNN3	Q15417	329 aa	Known RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	TMEM95	Q3KNT9	176 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	KRTAP27-1	Q3LI81	207 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	ZBED5	Q49AG3	693 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	RABL3	Q5HYI8	236 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	CASC10	Q5T4H9	136 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	PGM2L1	Q6PCE3	622 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	CFAP77	Q6ZQR2	320 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	FAM122B	Q7Z309	247 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	DPY19L4	Q7Z388	723 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	TSEN54	Q7Z6J9	526 aa	Known RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	TMEM219	Q86XT9	240 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	C11orf53	Q8IXP5	236 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	OR5D13	Q8NGL4	314 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	LZIC	Q8WZA0	190 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	TSSK2	Q96PF2	358 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	ATF6B	Q99941	703 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	INPP5E	Q9NRR6	644 aa		13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	VSX1	Q9NZR4	365 aa	Predicted RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	SLC25A10	Q9UBX3	287 aa	Predicted RBP	13.08	□□□□□ -0.32
CLK3-223	ENST00000568488	CLIC3	O95833	236 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	TFF1	P04155	84 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	CHRM2	P08172	466 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	PAICS	P22234	425 aa	Known RBP	13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	LMO1	P25800	156 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	YAP1	P46937	504 aa	Known RBP	13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	SLC18A1	P54219	525 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	LGALS4	P56470	323 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	CSNK2B	P67870	215 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	SNAI3	Q3KNW1	292 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488		Q6ZS46	218 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	OR2AJ1	Q8NGZ0	328 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	NDEL1	Q9GZM8	345 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	MUC13	Q9H3R2	512 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	A4GNT	Q9UNA3	340 aa		13.07	□□□□□ -0.32
CLK3-223	ENST00000568488	DNAH7	Q8WXX0	4024 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	NKX6-3	A6NJ46	265 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	13.06	□□□□□ -0.32
CLK3-223	ENST00000568488		M0R135	149 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	CDC42EP2	O14613	210 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	NAA10	P41227	235 aa	Predicted RBP	13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	SLC18B1	Q6NT16	456 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	DNM1P34	Q6PK57	102 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	WDR82	Q6UXN9	313 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	PTCHD4	Q6ZW05	846 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	WDR86	Q86TI4	376 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	SDR9C7	Q8NEX9	313 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	OR56B2P	Q8NGI1	322 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	C12orf43	Q96C57	262 aa	Known RBP	13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	ZNF799	Q96GE5	643 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	PRRC1	Q96M27	445 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	EBF4	Q9BQW3	602 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	GPR61	Q9BZJ8	451 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	SRA1	Q9HD15	236 aa	Known RBP	13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	ABCB10	Q9NRK6	738 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	TCF19	Q9Y242	345 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	N6AMT1	Q9Y5N5	214 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	IER3IP1	Q9Y5U9	82 aa		13.06	□□□□□ -0.32
CLK3-223	ENST00000568488	TMEM120B	A0PK00	339 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	DCTN6	O00399	190 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ANGPT2	O15123	496 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	SYNGR1	O43759	233 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	GLCE	O94923	617 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	CCDC159	P0C7I6	412 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	CRABP1	P29762	137 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	CDKN2A	P42771	156 aa	Known RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	IDH3A	P50213	366 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	BLCAP	P62952	87 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	NFYC	Q13952	458 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	DGUOK	Q16854	277 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	RFX4	Q33E94	735 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	GLYATL3	Q5SZD4	288 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ATPAF1	Q5TC12	328 aa	Predicted RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	STUM	Q69YW2	141 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	GPR139	Q6DWJ6	353 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	TBPL2	Q6SJ96	375 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ZNF730	Q6ZMV8	503 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	CENPV	Q7Z7K6	275 aa	Predicted RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	MKX	Q8IYA7	352 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	FAM185A	Q8N0U4	392 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	OR1M1	Q8NGA1	313 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	MED30	Q96HR3	178 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	TPD52L3	Q96J77	140 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ASCL2	Q99929	193 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	FNDC11	Q9BVV2	318 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	NSRP1	Q9H0G5	558 aa	Known RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ELL3	Q9HB65	397 aa	Predicted RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	HAO2	Q9NYQ3	351 aa		13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	TSSC4	Q9Y5U2	329 aa	Predicted RBP	13.05	□□□□□ -0.32
CLK3-223	ENST00000568488	ANKRD30BL	A7E2S9	258 aa		13.04	□□□□□ -0.32
CLK3-223	ENST00000568488	F2RL2	O00254	374 aa		13.04	□□□□□ -0.32
CLK3-223	ENST00000568488	CDIPT	O14735	213 aa		13.04	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms