RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 ROM1Q03395 351 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 KCTD18Q6PI47 426 aaPredicted RBP12.6□□□□□ -0.39
VPS39-210ENST00000568357 OR8B12Q8NGG6 310 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 UBE2FQ969M7 185 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 ERGIC1Q969X5 290 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 PPP1R14AQ96A00 147 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 LYZL4Q96KX0 146 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 CNN2Q99439 309 aaKnown RBP12.6□□□□□ -0.39
VPS39-210ENST00000568357 TTTY10Q9BZA0 68 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 RGCCQ9H4X1 137 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 NIPAL2Q9H841 368 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 HAO2Q9NYQ3 351 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 NOP16Q9Y3C1 178 aaKnown RBP12.6□□□□□ -0.39
VPS39-210ENST00000568357 RHBDD3Q9Y3P4 386 aa12.6□□□□□ -0.39
VPS39-210ENST00000568357 PPIAL4EA0A075B759 164 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 ANKRD30BLA7E2S9 258 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 CEACAM18A8MTB9 384 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 F5H0A9 414 aaPredicted RBP12.59□□□□□ -0.39
VPS39-210ENST00000568357 PPIAL4DF5H284 164 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 MAGEB4O15481 346 aaPredicted RBP12.59□□□□□ -0.39
VPS39-210ENST00000568357 FSTL3O95633 263 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 PNPP00491 289 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 GRPP07492 148 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 WNT2P09544 360 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 PPIAL4FP0DN26 164 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 CFL1P23528 166 aaKnown RBP12.59□□□□□ -0.39
VPS39-210ENST00000568357 ACKR3P25106 362 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 THBS2P35442 1172 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 SRP14P37108 136 aaKnown RBP12.59□□□□□ -0.39
VPS39-210ENST00000568357 OR8B8Q15620 311 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 DEGS2Q6QHC5 323 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 ZNF826PQ6ZT77 177 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 KLBQ86Z14 1044 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 ZNF679Q8IYX0 411 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 MUC20Q8N307 709 aaPredicted RBP12.59□□□□□ -0.39
VPS39-210ENST00000568357 SPERTQ8NA61 448 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 PLPP7Q8NBV4 271 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 C19orf18Q8NEA5 215 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 OR11L1Q8NGX0 322 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 ASB17Q8WXJ9 295 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 OR8B4Q96RC9 309 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 APOL4Q9BPW4 351 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 TMEM246Q9BRR3 403 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 C19orf24Q9BVV8 132 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 TMPRSS13Q9BYE2 586 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 MROQ9BYG7 248 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 S100A14Q9HCY8 104 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 MMP26Q9NRE1 261 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 FAM206AQ9NX38 181 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 USE1Q9NZ43 259 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 PPIAL4AQ9Y536 164 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 TMEM14AQ9Y6G1 99 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 TANC2Q9HCD6 1990 aa12.59□□□□□ -0.39
VPS39-210ENST00000568357 A0A0G2JMP0 313 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 A0A0X1KG70 313 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 TMEM269A0A1B0GVZ9 245 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 E9PQ18 207 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 TRAPPC2LH3BP13 241 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 EI24O14681 340 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 ZNF254O75437 659 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 FOXH1O75593 365 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 IRF2P14316 349 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 DCTDP32321 178 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 CXCR4P61073 352 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 SRSF2Q01130 221 aaKnown RBP12.58□□□□□ -0.4
VPS39-210ENST00000568357 ZNF404Q494X3 552 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 ZNF322Q6U7Q0 402 aaPredicted RBP12.58□□□□□ -0.4
VPS39-210ENST00000568357 WDR86Q86TI4 376 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 GID4Q8IVV7 300 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 C11orf53Q8IXP5 236 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 SLC35F2Q8IXU6 374 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 C10orf67Q8IYJ2 551 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 C1orf87Q8N0U7 546 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 CBR4Q8N4T8 237 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 DEFB108BQ8NET1 73 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 OR4M2Q8NGB6 313 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 OR51G2Q8NGK0 314 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 OR8J1Q8NGP2 316 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 EME1Q96AY2 570 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 FN3KRPQ9HA64 309 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 C1orf123Q9NWV4 160 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.58□□□□□ -0.4
VPS39-210ENST00000568357 RNF7Q9UBF6 113 aa12.58□□□□□ -0.4
VPS39-210ENST00000568357 LOC105371242A0A075B767 164 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 ACOD1A6NK06 481 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 HTR1FP30939 366 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 ALDH3A2P51648 485 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 ZIK1Q3SY52 487 aaPredicted RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 DCAF12L2Q5VW00 463 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 SFRP4Q6FHJ7 346 aaPredicted RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 LYPD2Q6UXB3 125 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 BOLLQ8N9W6 283 aaKnown RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 CSNK2A3Q8NEV1 391 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 OR8S1Q8NH09 359 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 RAB3IPQ96QF0 476 aaPredicted RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 SLC29A1Q99808 456 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 PBOV1Q9GZY1 135 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 C7orf69Q9H7B7 122 aa12.57□□□□□ -0.4
VPS39-210ENST00000568357 METTL17Q9H7H0 456 aaPredicted RBP12.57□□□□□ -0.4
VPS39-210ENST00000568357 C14orf119Q9NWQ9 140 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms