RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 ZNF19P17023 458 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 ETV1P50549 477 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 NANOS3P60323 173 aaKnown RBP16.56■□□□□ 0.24
CLN3-225ENST00000566824 GALEQ14376 348 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 ODF4Q2M2E3 257 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 KLHL22Q53GT1 634 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 FAM209AQ5JX71 171 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 ELMOD2Q8IZ81 293 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 OR13G1Q8NGZ3 307 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 RDH5Q92781 318 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 C4orf36Q96KX1 117 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 OR2V2Q96R30 315 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 VCX3BQ9H321 246 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 SAP30LQ9HAJ7 183 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 GPR84Q9NQS5 396 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 ZNF275Q9NSD4 429 aaPredicted RBP16.56■□□□□ 0.24
CLN3-225ENST00000566824 DECR2Q9NUI1 292 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 RHBDD3Q9Y3P4 386 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 PCDHGB1Q9Y5G3 927 aa16.56■□□□□ 0.24
CLN3-225ENST00000566824 ABCA2Q9BZC7 2435 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 A0A0U1RQV5 110 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 E9PI62 339 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 H3BSH0 61 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 P2RY10O00398 339 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 VHLP40337 213 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 CRYBB2P43320 205 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 RIN1Q13671 783 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 OR8B8Q15620 311 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 ZMAT1Q5H9K5 638 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 WDR38Q5JTN6 314 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 BCL2L15Q5TBC7 163 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 BPIFB6Q8NFQ5 453 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 SGCDQ92629 289 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 PELI1Q96FA3 418 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 FAM71F1Q96KD3 344 aaPredicted RBP16.55■□□□□ 0.24
CLN3-225ENST00000566824 DIRC2Q96SL1 478 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 REG4Q9BYZ8 158 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 RGCCQ9H4X1 137 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 OPA3Q9H6K4 179 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 CLEC2DQ9UHP7 191 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 SNX5Q9Y5X3 404 aa16.55■□□□□ 0.24
CLN3-225ENST00000566824 TLN2Q9Y4G6 2542 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 IGHV1-69-2A0A0G2JMI3 117 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 LOC390937A0A1W2PQ73 354 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 CD99P14209 185 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 MYF6P23409 242 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 GIFP27352 417 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 DSCR9P59020 149 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 MAB21L1Q13394 359 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 MEGF10Q96KG7 1140 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 SMR3AQ99954 134 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 JAM3Q9BX67 310 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 ANKRD60Q9BZ19 345 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 BPESC1Q9GZL8 116 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 PLCXD1Q9NUJ7 323 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 PSORS1C1Q9UIG5 152 aa16.54■□□□□ 0.24
CLN3-225ENST00000566824 CSPG4Q6UVK1 2322 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 WNT9BO14905 357 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 LMX1BO60663 402 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 CSF3P09919 207 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 PMELP40967 661 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 NR4A2P43354 598 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 DOC2BQ14184 412 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 OR8G1Q15617 311 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 C6orf141Q5SZD1 244 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 PRAMEF6Q5VXH4 476 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 FAM220AQ7Z4H9 259 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 RDH10Q8IZV5 341 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 OR2G2Q8NGZ5 317 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 COX4I2Q96KJ9 171 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 ADAT1Q9BUB4 502 aaKnown RBP16.53■□□□□ 0.24
CLN3-225ENST00000566824 EGLN1Q9GZT9 426 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 FGF23Q9GZV9 251 aaPredicted RBP16.53■□□□□ 0.24
CLN3-225ENST00000566824 MYOZ1Q9NP98 299 aaPredicted RBP16.53■□□□□ 0.24
CLN3-225ENST00000566824 MRPL15Q9P015 296 aaKnown RBP16.53■□□□□ 0.24
CLN3-225ENST00000566824 FRRS1LQ9P0K9 344 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 IL19Q9UHD0 177 aa16.53■□□□□ 0.24
CLN3-225ENST00000566824 DIMT1Q9UNQ2 313 aaKnown RBP16.53■□□□□ 0.24
CLN3-225ENST00000566824 IGHV4-61A0A0C4DH41 118 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 LOC100289279A0A1B0GTE1 492 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 ACHEP22303 614 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 CFL1P23528 166 aaKnown RBP16.52■□□□□ 0.24
CLN3-225ENST00000566824 DDOSTP39656 456 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 MRPS11P82912 194 aaKnown RBP16.52■□□□□ 0.24
CLN3-225ENST00000566824 HOXA4Q00056 320 aaPredicted RBP16.52■□□□□ 0.24
CLN3-225ENST00000566824 ST3GAL4Q11206 333 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 DMRTC1Q5HYR2 192 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 OR2G6Q5TZ20 316 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 COMMD2Q86X83 199 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 PLPP7Q8NBV4 271 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 ZNF420Q8TAQ5 688 aaPredicted RBP16.52■□□□□ 0.24
CLN3-225ENST00000566824 CCL17Q92583 94 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 PIMREGQ9BSJ6 248 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 MOB1AQ9H8S9 216 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 CHODLQ9H9P2 273 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 INPP5EQ9NRR6 644 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 FKBP14Q9NWM8 211 aa16.52■□□□□ 0.24
CLN3-225ENST00000566824 PAK1IP1Q9NWT1 392 aaPredicted RBP16.52■□□□□ 0.24
CLN3-225ENST00000566824 MTORP42345 2549 aa16.52■□□□□ 0.23
CLN3-225ENST00000566824 A6NIN4 97 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms