RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 HSPA13P48723 471 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 ZNF85Q03923 595 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 SMN1Q16637 294 aaKnown RBP14.65□□□□□ -0.06
CLN3-217ENST00000565354 TP53I3Q53FA7 332 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 BCL2L15Q5TBC7 163 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 PRSS45Q7RTY3 260 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 THAP5Q7Z6K1 395 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 OR56B2PQ8NGI1 322 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 TFAP2CQ92754 450 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 RDH5Q92781 318 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 SGK3Q96BR1 496 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 FAM206AQ9NX38 181 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 ZNF391Q9UJN7 358 aa14.65□□□□□ -0.06
CLN3-217ENST00000565354 NOP16Q9Y3C1 178 aaKnown RBP14.65□□□□□ -0.06
CLN3-217ENST00000565354 LOC390937A0A1W2PQ73 354 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 ANKRD30BLA7E2S9 258 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 NCR1O76036 304 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 ANOS1P23352 680 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 DDOSTP39656 456 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 VHLP40337 213 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 MMP16P51512 607 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 ACTA2P62736 377 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 ACTG2P63267 376 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 MFGE8Q08431 387 aaPredicted RBP14.64□□□□□ -0.07
CLN3-217ENST00000565354 CDK5R2Q13319 367 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SNCBQ16143 134 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 LIPNQ5VXI9 398 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 Q6ZR03 302 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 OR52I1Q8NGK6 324 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SPSB4Q96A44 273 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SIGLEC11Q96RL6 698 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SLC22A4Q9H015 551 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SHARPINQ9H0F6 387 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 INPP5EQ9NRR6 644 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 ZNF319Q9P2F9 582 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 OR52A1Q9UKL2 312 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 SNX5Q9Y5X3 404 aa14.64□□□□□ -0.07
CLN3-217ENST00000565354 IGHV1-69-2A0A0G2JMI3 117 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 LYNX1G3V0Z9 82 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 J3QLW9 94 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 NDUFS8O00217 210 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 CDC14BO60729 498 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 FAM20BO75063 409 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 ADH4P08319 380 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 LYNX1P0DP58 116 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 SLC25A16P16260 332 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 ZNF19P17023 458 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 TNFRSF1AP19438 455 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 FAM3AP98173 230 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 LOXL1Q08397 574 aaPredicted RBP14.63□□□□□ -0.07
CLN3-217ENST00000565354 MED21Q13503 144 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 OR8G1Q15617 311 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 KCTD20Q7Z5Y7 419 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 LHFPL3Q86UP9 236 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 ZNF786Q8N393 782 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 FTMTQ8N4E7 242 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 OR10AD1Q8NGE0 317 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 C10orf105Q8TEF2 133 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 SLC30A2Q9BRI3 323 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 ALG8Q9BVK2 526 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 MRPS18AQ9NVS2 196 aaKnown RBP14.63□□□□□ -0.07
CLN3-217ENST00000565354 CHCHD3Q9NX63 227 aaKnown RBP14.63□□□□□ -0.07
CLN3-217ENST00000565354 NUFIP1Q9UHK0 495 aaKnown RBP14.63□□□□□ -0.07
CLN3-217ENST00000565354 MYRFQ9Y2G1 1151 aa14.63□□□□□ -0.07
CLN3-217ENST00000565354 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP14.62□□□□□ -0.07
CLN3-217ENST00000565354 A0A0U1RQV5 110 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 hCG_38984A0A1B0GV85 526 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 J3QRE1 110 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 LILRA1O75019 489 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 CD55P08174 381 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 ACHEP22303 614 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 CA6P23280 308 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 GNALP38405 381 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 SRP9P49458 86 aaKnown RBP14.62□□□□□ -0.07
CLN3-217ENST00000565354 GSK3AP49840 483 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 GALEQ14376 348 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 HFEQ30201 348 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 CDONQ4KMG0 1287 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 ZNF540Q8NDQ6 660 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 CSNK2A3Q8NEV1 391 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 BPIFB6Q8NFQ5 453 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 ITLN1Q8WWA0 313 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 FAM71F1Q96KD3 344 aaPredicted RBP14.62□□□□□ -0.07
CLN3-217ENST00000565354 C4orf36Q96KX1 117 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 OR2V2Q96R30 315 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 ADAT1Q9BUB4 502 aaKnown RBP14.62□□□□□ -0.07
CLN3-217ENST00000565354 CHODLQ9H9P2 273 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 ACOXLQ9NUZ1 547 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 MRPL15Q9P015 296 aaKnown RBP14.62□□□□□ -0.07
CLN3-217ENST00000565354 IL19Q9UHD0 177 aa14.62□□□□□ -0.07
CLN3-217ENST00000565354 H0YL77 283 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 MTRF1O75570 445 aaKnown RBP14.61□□□□□ -0.07
CLN3-217ENST00000565354 PNPP00491 289 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 IGHA1P01876 353 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 HLA-DPB1P04440 258 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 HTR1AP08908 422 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 MYL12AP19105 171 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 COL8A2P25067 703 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 DCKP27707 260 aa14.61□□□□□ -0.07
CLN3-217ENST00000565354 PSMB10P40306 273 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms