RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 ENPP5Q9UJA9 477 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 R4GMQ9 66 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 DMXL2Q8TDJ6 3036 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 KNG1P01042 644 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CD3EP07766 207 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 UBCP0CG48 685 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PTAFRP25105 342 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CTSSP25774 331 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 HTR2CP28335 458 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 RBMXP38159 391 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PPP1CBP62140 327 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF846Q147U1 533 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CNN3Q15417 329 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 RGS21Q2M5E4 152 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 Q6ZS92 163 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OR52N1Q8NH53 320 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 AKAP1Q92667 903 aaKnown RBP eCLIP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SMIM19Q96E16 107 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 C4orf45Q96LM5 186 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 KCNJ15Q99712 375 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SF3B5Q9BWJ5 86 aaKnown RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 HINT2Q9BX68 163 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 TMEM59Q9BXS4 323 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 OR2H1Q9GZK4 316 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 PLEKHB1Q9UF11 243 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF222Q9UK12 451 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 SIRT4Q9Y6E7 314 aaPredicted RBP4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CEPT1Q9Y6K0 416 aa4.77□□□□□ -1.65
VPS13C-209ENST00000560637 CCDC182A6NF36 153 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 HSPB2A8KAH6 182 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 A8MV72 311 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ADAM10O14672 748 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 UBL3O95164 117 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PNPP00491 289 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 HRGP04196 525 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ACSM4P0C7M7 580 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 COL8A1P27658 744 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GLP1RP43220 463 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ALDH3B1P43353 468 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TMBIM6P55061 237 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 NANOS3P60323 173 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 HSPB2Q16082 182 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ARSJQ5FYB0 599 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PRAMEF6Q5VXH4 476 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SFXN4Q6P4A7 337 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 DOLPP1Q86YN1 238 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF584Q8IVC4 421 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 C17orf78Q8N4C9 275 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SCCPDHQ8NBX0 429 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 OR6Q1Q8NGQ2 317 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 OR13F1Q8NGS4 319 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 RFESDQ8TAC1 157 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 NINJ1Q92982 152 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 WNT2BQ93097 391 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SLC35B4Q969S0 331 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SLAMF9Q96A28 289 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 KCNK17Q96T54 332 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 DOK1Q99704 481 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ADAT1Q9BUB4 502 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 DNTTIP1Q9H147 329 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PLK3Q9H4B4 646 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PROK2Q9HC23 129 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 INPP5EQ9NRR6 644 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PTTG2Q9NZH5 202 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GPR160Q9UJ42 338 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF391Q9UJN7 358 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 SPATA2Q9UM82 520 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ACANP16112 2415 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 A0A1W2PNV4 684 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TMEM129A0AVI4 362 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CDIPTO14735 213 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PPIHO43447 177 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GPRIN2O60269 458 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF432O94892 652 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 HPNP05981 417 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GLRA1P23415 457 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 RBP2P50120 134 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PCK2Q16822 640 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CHRFAM7AQ494W8 412 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 EXOSC6Q5RKV6 272 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 MZT2BQ6NZ67 158 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 MEX3BQ6ZN04 569 aaKnown RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ZNF826PQ6ZT77 177 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 DOK3Q7L591 496 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GGNQ86UU5 652 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FAM169BQ8N8A8 192 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 CSNK2A3Q8NEV1 391 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 STEAP2Q8NFT2 490 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FGFBP3Q8TAT2 258 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TBC1D15Q8TC07 691 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ABHD5Q8WTS1 349 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 APOBEC3DQ96AK3 386 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 ABCG5Q9H222 651 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 METTL17Q9H7H0 456 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 FRRS1LQ9P0K9 344 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 B3GAT1Q9P2W7 334 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 GLS2Q9UI32 602 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 PCNX3Q9H6A9 2034 aa4.76□□□□□ -1.65
VPS13C-209ENST00000560637 TEX13DA0A0J9YY54 714 aaPredicted RBP4.76□□□□□ -1.65
VPS13C-209ENST00000560637 A0A1W2PQ09 198 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms