RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 MYEF2Q9P2K5 600 aaKnown RBP8.61□□□□□ -1.03
USP3-216ENST00000559873 PCDHGB5Q9Y5G0 923 aa8.61□□□□□ -1.03
USP3-216ENST00000559873 FBN2P35556 2912 aa8.61□□□□□ -1.03
USP3-216ENST00000559873 DCHS2Q6V1P9 2916 aa8.61□□□□□ -1.03
USP3-216ENST00000559873 ARID1AO14497 2285 aa8.61□□□□□ -1.03
USP3-216ENST00000559873 LOC107986453A0A1B0GWG9 222 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 TMEM212A6NML5 194 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ANXA2P2A6NMY6 339 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 SYT7O43581 403 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 PNPP00491 289 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ADH4P08319 380 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 NAT2P11245 290 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 TNFRSF1AP19438 455 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ACHEP22303 614 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 C21orf33P30042 268 aaPredicted RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 SRP9P49458 86 aaKnown RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 GSK3AP49840 483 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ETV1P50549 477 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 DSCR9P59020 149 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 RIPPLY1Q0D2K3 151 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ALKBH1Q13686 389 aaKnown RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 WDR38Q5JTN6 314 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 RPL22L1Q6P5R6 122 aaKnown RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 KLBQ86Z14 1044 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 SVOPQ8N4V2 548 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ZNF676Q8N7Q3 588 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 SPERTQ8NA61 448 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 OR51E1Q8TCB6 317 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ELMOD3Q96FG2 381 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 FAM71F1Q96KD3 344 aaPredicted RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 ZNF649Q9BS31 505 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ADAT1Q9BUB4 502 aaKnown RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 TPK1Q9H3S4 243 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ISG20L2Q9H9L3 353 aaKnown RBP8.6□□□□□ -1.03
USP3-216ENST00000559873 SAP30LQ9HAJ7 183 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 MSL2Q9HCI7 577 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 BABAM2Q9NXR7 383 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 UBAP1Q9NZ09 502 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 ENPP5Q9UJA9 477 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 SLC22A13Q9Y226 551 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 LRCH1Q9Y2L9 728 aa8.6□□□□□ -1.03
USP3-216ENST00000559873 TRBV2A0A0J9YWF9 115 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ZNF816-ZNF321PA0A0X1KG74 233 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ZSCAN5BA6NJL1 495 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 P2RY10O00398 339 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 SPRY3O43610 288 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 GMDSO60547 372 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 F12P00748 615 aaPredicted RBP8.59□□□□□ -1.03
USP3-216ENST00000559873 IGLV3-1P01715 115 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 IGHV1-46P01743 117 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ISG15P05161 165 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CD55P08174 381 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CCL1P22362 96 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ART1P52961 327 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CDH15P55291 814 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 TNFAIP6P98066 277 aaPredicted RBP8.59□□□□□ -1.03
USP3-216ENST00000559873 BDH1Q02338 343 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CDK5R1Q15078 307 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 OR8G1Q15617 311 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ODF4Q2M2E3 257 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 OR2G6Q5TZ20 316 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 SHEQ5VZ18 495 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CLEC2AQ6UVW9 174 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 PRSS35Q8N3Z0 413 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 OR2Z1Q8NG97 314 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 OR8S1Q8NH09 359 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 OR5AK2Q8NH90 309 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 GATAD2BQ8WXI9 593 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 C10orf35Q96D05 121 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 SMIM19Q96E16 107 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 TECTBQ96PL2 329 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 SORCS2Q96PQ0 1159 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 HIST1H2AAQ96QV6 131 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 MICU1Q9BPX6 476 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 SLC30A2Q9BRI3 323 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 PAPOLGQ9BWT3 736 aaKnown RBP8.59□□□□□ -1.03
USP3-216ENST00000559873 C14orf119Q9NWQ9 140 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ZNF319Q9P2F9 582 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 IL19Q9UHD0 177 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CLEC2DQ9UHP7 191 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 HHLA2Q9UM44 414 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 MPC1Q9Y5U8 109 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 CSMD1Q96PZ7 3565 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 ARFGEF3Q5TH69 2177 aa8.59□□□□□ -1.03
USP3-216ENST00000559873 MAST4O15021 2626 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 C5orf63A6NC05 138 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 OR4C45A6NMZ5 311 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 GATBO75879 557 aaKnown RBP8.58□□□□□ -1.04
USP3-216ENST00000559873 TNFAIP8O95379 198 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 SERPINA3P01011 423 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 CST4P01036 141 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 IGHV4-39P01824 125 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 MT-ND2P03891 347 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 ZNF20P17024 532 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 CA6P23280 308 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 ANOS1P23352 680 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 KIR3DL2P43630 455 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 PDLIM4P50479 330 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 PRSS12P56730 875 aa8.58□□□□□ -1.04
USP3-216ENST00000559873 NANOS3P60323 173 aaKnown RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms