RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 XRCC2O43543 280 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 CD3GP09693 182 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 FAHP16930 419 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 ACKR3P25106 362 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 STOMP27105 288 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 TGFBR3Q03167 851 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 RIPPLY1Q0D2K3 151 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 TNK1Q13470 666 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 UBE2V2Q15819 145 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 TBRG1Q3YBR2 411 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 HIKESHIQ53FT3 197 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 ZNF324BQ6AW86 544 aaPredicted RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 CCDC36Q8IYA8 594 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 CADM3Q8N126 398 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 OR2AE1Q8NHA4 323 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 MBD3L2Q8NHZ7 208 aaPredicted RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 AKAP1Q92667 903 aaKnown RBP eCLIP11.02□□□□□ -0.64
USP3-213ENST00000559711 PPP1R14BQ96C90 147 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 BOD1Q96IK1 185 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 POM121L2Q96KW2 1035 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 PLSCR4Q9NRQ2 329 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 RAB22AQ9UL26 194 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 TP53TG5Q9Y2B4 290 aa11.02□□□□□ -0.64
USP3-213ENST00000559711 RBMX2Q9Y388 322 aaKnown RBP11.02□□□□□ -0.64
USP3-213ENST00000559711 TNRC6AQ8NDV7 1962 aaKnown RBP11.02□□□□□ -0.65
USP3-213ENST00000559711 hCG_38984A0A1B0GV85 526 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ORC5O43913 435 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 EDN3P14138 238 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 IGHV1-2P23083 117 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 PTGER4P35408 488 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 KIR2DL3P43628 341 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 UCNP55089 124 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 FAM3AP98173 230 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 PLP2Q04941 152 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 GPR176Q14439 515 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ZNF585AQ6P3V2 769 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 CRIP3Q6Q6R5 217 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 SEM1Q6ZVN7 128 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 RNF144BQ7Z419 303 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ANGPTL5Q86XS5 388 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ZNF584Q8IVC4 421 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 PAQR4Q8N4S7 273 aaPredicted RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 CELF2-AS1Q8N7Q2 184 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 OR52I2Q8NH67 350 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 FCAMRQ8WWV6 532 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 NANOS1Q8WY41 292 aaKnown RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 EXTL1Q92935 676 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ITFG2Q969R8 447 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ZNF75AQ96N20 296 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ATG5Q9H1Y0 275 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 FREM1Q5H8C1 2179 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 RTTNQ86VV8 2226 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 C5orf49A4QMS7 147 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 TMEM14DPA8MWL7 114 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 WDR1O75083 606 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 HCKP08631 526 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 VSIG8P0DPA2 414 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 HOXB1P14653 301 aaPredicted RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 GDNFP39905 211 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ALDH3B1P43353 468 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 GSK3AP49840 483 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ZNF92Q03936 586 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 DYRK1AQ13627 763 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 KLF9Q13886 244 aaPredicted RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 OR8B8Q15620 311 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 GSG1Q2KHT4 349 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 TMEM42Q69YG0 159 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 TOMM5Q8N4H5 51 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 CNEP1R1Q8N9A8 125 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 ENKURQ8TC29 256 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 SNRNP27Q8WVK2 155 aaKnown RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 PHF21AQ96BD5 680 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 C1orf147Q96MC9 270 aaPredicted RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 SPACA5Q96QH8 159 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 C7orf50Q9BRJ6 194 aaKnown RBP11.01□□□□□ -0.65
USP3-213ENST00000559711 AUNIPQ9H7T9 357 aa11.01□□□□□ -0.65
USP3-213ENST00000559711 TRAV18A0A075B6X5 111 aa11□□□□□ -0.65
USP3-213ENST00000559711 TNFSF13O75888 250 aa11□□□□□ -0.65
USP3-213ENST00000559711 KDM4BO94953 1096 aa11□□□□□ -0.65
USP3-213ENST00000559711 CGAP01215 116 aa11□□□□□ -0.65
USP3-213ENST00000559711 SERPINA5P05154 406 aa11□□□□□ -0.65
USP3-213ENST00000559711 CRHP06850 196 aa11□□□□□ -0.65
USP3-213ENST00000559711 UBBP0CG47 229 aa11□□□□□ -0.65
USP3-213ENST00000559711 COX5AP20674 150 aa11□□□□□ -0.65
USP3-213ENST00000559711 SLC6A1P30531 599 aa11□□□□□ -0.65
USP3-213ENST00000559711 SRP9P49458 86 aaKnown RBP11□□□□□ -0.65
USP3-213ENST00000559711 TMPRSS3P57727 454 aa11□□□□□ -0.65
USP3-213ENST00000559711 FOXF2Q12947 444 aa11□□□□□ -0.65
USP3-213ENST00000559711 UNC119Q13432 240 aa11□□□□□ -0.65
USP3-213ENST00000559711 KISS1Q15726 138 aa11□□□□□ -0.65
USP3-213ENST00000559711 GABRA6Q16445 453 aa11□□□□□ -0.65
USP3-213ENST00000559711 ZBTB37Q5TC79 503 aa11□□□□□ -0.65
USP3-213ENST00000559711 AWAT2Q6E213 333 aa11□□□□□ -0.65
USP3-213ENST00000559711 RTL6Q6ICC9 239 aa11□□□□□ -0.65
USP3-213ENST00000559711 OR10K2Q6IF99 312 aa11□□□□□ -0.65
USP3-213ENST00000559711 MTFR2Q6P444 385 aa11□□□□□ -0.65
USP3-213ENST00000559711 VWA1Q6PCB0 445 aa11□□□□□ -0.65
USP3-213ENST00000559711 FAM180AQ6UWF9 173 aa11□□□□□ -0.65
USP3-213ENST00000559711 KRT74Q7RTS7 529 aa11□□□□□ -0.65
USP3-213ENST00000559711 OR2W3Q7Z3T1 314 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 108.3 ms