RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 SWI5Q1ZZU3 235 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 PCGF3Q3KNV8 242 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 WDR38Q5JTN6 314 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 OR2T2Q6IF00 324 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 SPARTQ8N0X7 666 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 PRSS35Q8N3Z0 413 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 MS4A15Q8N5U1 240 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 ZNF485Q8NCK3 441 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 OR8G5Q8NG78 346 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 OR2AE1Q8NHA4 323 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 UFD1Q92890 307 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 SMIM19Q96E16 107 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 FAM71F1Q96KD3 344 aaPredicted RBP7.91□□□□□ -1.14
LDLR-210ENST00000559340 HIST1H2AAQ96QV6 131 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 MGLLQ99685 303 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 CCL19Q99731 98 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 TRAF4Q9BUZ4 470 aaPredicted RBP7.91□□□□□ -1.14
LDLR-210ENST00000559340 PLEKHA1Q9HB21 404 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 ACOT13Q9NPJ3 140 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 NKIRAS2Q9NYR9 191 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 MRPL15Q9P015 296 aaKnown RBP7.91□□□□□ -1.14
LDLR-210ENST00000559340 FRRS1LQ9P0K9 344 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 ENPP5Q9UJA9 477 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 FZR1Q9UM11 496 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 LAMP3Q9UQV4 416 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 ZNF281Q9Y2X9 895 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 MPC1Q9Y5U8 109 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 ITPR2Q14571 2701 aa7.91□□□□□ -1.14
LDLR-210ENST00000559340 UTP20O75691 2785 aaKnown RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 ABCA12Q86UK0 2595 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 DOCK11Q5JSL3 2073 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ZNF816-ZNF321PA0A0X1KG74 233 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 hCG_38984A0A1B0GV85 526 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 A0A1W2PPR1 153 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ANXA2P2A6NMY6 339 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 PLPP2O43688 288 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 GMDSO60547 372 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 GATBO75879 557 aaKnown RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 CLPTM1O96005 669 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 IGLV3-1P01715 115 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ADRA2AP08913 450 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 HSMCR30P0CW71 290 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ZNF20P17024 532 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 CELP19835 753 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 CCL1P22362 96 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 PSMA1P25786 263 aaKnown RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 MPV17P39210 176 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 KIR3DL2P43630 455 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 MAP2K4P45985 399 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 PPOXP50336 477 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ZNF81P51508 661 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 GTF2A1P52655 376 aaPredicted RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 RIPPLY3P57055 190 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 SLC3A1Q07837 685 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 TPBGQ13641 420 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 OR8B8Q15620 311 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 YIF1BQ5BJH7 314 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 UBE2UQ5VVX9 321 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 DMKNQ6E0U4 476 aaPredicted RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 PAMR1Q6UXH9 720 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 Q6ZSR3 168 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 PLPP7Q8NBV4 271 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 OR56B2PQ8NGI1 322 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 RPS4Y2Q8TD47 263 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 GPR148Q8TDV2 347 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 NEU4Q8WWR8 484 aaPredicted RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 SGCDQ92629 289 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 NINJ1Q92982 152 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 PPP1R14AQ96A00 147 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 TECTBQ96PL2 329 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 EGLN1Q9GZT9 426 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 POFUT1Q9H488 388 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ZNF319Q9P2F9 582 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 ST6GALNAC2Q9UJ37 374 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 DHDHQ9UQ10 334 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 LSM2Q9Y333 95 aaKnown RBP7.9□□□□□ -1.14
LDLR-210ENST00000559340 V9GYS6 101 aa7.9□□□□□ -1.14
LDLR-210ENST00000559340 CENPEQ02224 2701 aa7.9□□□□□ -1.15
LDLR-210ENST00000559340 ANKRD17O75179 2603 aaKnown RBP7.9□□□□□ -1.15
LDLR-210ENST00000559340 A0A1B0GTI1 187 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 LOC107986453A0A1B0GWG9 222 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 C17orf100A8MU93 164 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 E9PI62 339 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 TPD52L2O43399 206 aaKnown RBP7.89□□□□□ -1.15
LDLR-210ENST00000559340 ZFPL1O95159 310 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 CST4P01036 141 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 SOD3P08294 240 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 ADH4P08319 380 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 CPEP16870 476 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 MAPK3P27361 379 aaPredicted RBP7.89□□□□□ -1.15
LDLR-210ENST00000559340 SRP9P49458 86 aaKnown RBP7.89□□□□□ -1.15
LDLR-210ENST00000559340 NANOS3P60323 173 aaKnown RBP7.89□□□□□ -1.15
LDLR-210ENST00000559340 OR8G1Q15617 311 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 ODF4Q2M2E3 257 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 MST1LQ2TV78 715 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 ARMCX4Q5H9R4 360 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 CLVS2Q5SYC1 327 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 KCTD8Q6ZWB6 473 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 LRP11Q86VZ4 500 aa7.89□□□□□ -1.15
LDLR-210ENST00000559340 OR5AS1Q8N127 324 aa7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms