RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 ILKQ13418 452 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PRPSAP1Q14558 356 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 MAD2L1BPQ15013 274 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TATDN3Q17R31 274 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CDNFQ49AH0 187 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 AADACL4Q5VUY2 407 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SAXO2Q658L1 398 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLC25A25Q6KCM7 469 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 AFTPHQ6ULP2 937 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TMPRSS11AQ6ZMR5 421 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 EIF3MQ7L2H7 374 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LRP11Q86VZ4 500 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TRIM69Q86WT6 500 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 FUNDC1Q8IVP5 155 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CDKL3Q8IVW4 592 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CENPLQ8N0S6 344 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CYP4Z2PQ8N1L4 340 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 MS4A15Q8N5U1 240 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CLDN22Q8N7P3 220 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM185AQ8NFB2 350 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 WDR36Q8NI36 951 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF461Q8TAF7 563 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 GPR151Q8TDV0 419 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SDR42E1Q8WUS8 393 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SFT2D1Q8WV19 159 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 UCN3Q969E3 161 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 NTAN1Q96AB6 310 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ISG20Q96AZ6 181 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PINX1Q96BK5 328 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LRRC58Q96CX6 371 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SAMD8Q96LT4 415 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LINC00052Q96N35 136 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 COL21A1Q96P44 957 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ERMAPQ96PL5 475 aaPredicted RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CSPG4P5Q96PW8 444 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLC38A2Q96QD8 506 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 OR2M2Q96R28 347 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 RBBP8Q99708 897 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 MRPL57Q9BQC6 102 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM175Q9BSA9 504 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 PDCD10Q9BUL8 212 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CDCA4Q9BXL8 241 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 NLNQ9BYT8 704 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CCDC90BQ9GZT6 254 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ANKRD19PQ9H560 264 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 ELOVL6Q9H5J4 265 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TMEM231Q9H6L2 316 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 MRPS30Q9NP92 439 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 STARD5Q9NSY2 213 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 DCAF13Q9NV06 445 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 EXD2Q9NVH0 621 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TREM2Q9NZC2 230 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 BTNL2Q9UIR0 455 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 LAMP5Q9UJQ1 280 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SCP2D1Q9UJQ7 156 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CDH9Q9ULB4 789 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CLEC4AQ9UMR7 237 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 NPTNQ9Y639 398 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 SLC22A7Q9Y694 548 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 CLCA3PQ9Y6N3 262 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 U3KQV3 271 aa2.21□□□□□ -2.06
VPS13C-208ENST00000559119 TNRC6CQ9HCJ0 1690 aaKnown RBP2.21□□□□□ -2.06
VPS13C-208ENST00000559119 THSD7BQ9C0I4 1608 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 DDX60LQ5H9U9 1706 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MEIKINA0A087WXM9 373 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 A0A0J9YYE9 177 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 KIR2DS1A0A191URI9 304 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SMIM28A0A1B0GU29 152 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 C9orf170A2RU37 121 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RAB19A4D1S5 217 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 D6RAR5 112 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZNF670-ZNF695F2Z2N8 137 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 F8VP50 259 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 INMT-MINDY4F8WBC2 141 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TEX46H3BTG2 121 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 K7ENP7 123 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SLC31A2O15432 143 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MSH4O15457 936 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NUPL2O15504 423 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 LYRM1O43325 122 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CHP2O43745 196 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SCN2BO60939 215 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NDUFS6O75380 124 aaKnown RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 STX11O75558 287 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 EIF3GO75821 320 aaKnown RBP eCLIP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 OR4F21O95013 312 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 SCELO95171 688 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 MPC2O95563 127 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 NDUFB10O96000 172 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CST1P01037 141 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TGFAP01135 160 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CXCL10P02778 98 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 RLN2P04090 185 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 CD55P08174 381 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ZDHHC11BP0C7U3 371 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 PIPP12273 146 aaPredicted RBP2.2□□□□□ -2.06
VPS13C-208ENST00000559119 ANXA3P12429 323 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 IGLL1P15814 213 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 UGT2B7P16662 529 aa2.2□□□□□ -2.06
VPS13C-208ENST00000559119 TSPAN8P19075 237 aa2.2□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms