RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 FBXW9Q5XUX1 488 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 PLCXD3Q63HM9 321 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 PRMT9Q6P2P2 845 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 C12orf54Q6X4T0 127 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 SNX20Q7Z614 316 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 SNX31Q8N9S9 440 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 OR11H7Q8NGC8 314 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 OR56A4Q8NGH8 313 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 PEX13Q92968 403 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 NRBF2Q96F24 287 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 C9orf72Q96LT7 481 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 FOXC2Q99958 501 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 ZNF430Q9H8G1 570 aaPredicted RBP3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 MED4Q9NPJ6 270 aa3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.29□□□□□ -1.88
CKS1BP1-201ENST00000555221 AKAP12Q02952 1782 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 TMEM223A0PJW6 202 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 SYCE1LA8MT33 242 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 H7C417 338 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 BCKDKO14874 412 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 RAD51BO15315 384 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 YIF1AO95070 293 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 CCT6AP40227 531 aaKnown RBP3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 RFC3P40938 356 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 CDKN2DP55273 166 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 SPAG1Q07617 926 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 LOXL1Q08397 574 aaPredicted RBP3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 SMUG1Q53HV7 270 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 Q6ZR03 302 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 NTM-AS1Q6ZSK4 140 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 DEFB132Q7Z7B7 95 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 UBALD2Q8IYN6 164 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 H1FOOQ8IZA3 346 aaPredicted RBP3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 GPX8Q8TED1 209 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 CALN1Q9BXU9 219 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 PXMP2Q9NR77 195 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 CYTL1Q9NRR1 136 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 NECAP2Q9NVZ3 263 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 SLC39A1Q9NY26 324 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 AHSPQ9NZD4 102 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 MTFP1Q9UDX5 166 aa3.28□□□□□ -1.88
CKS1BP1-201ENST00000555221 MON2Q7Z3U7 1717 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PALLDQ8WX93 1383 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 GAKO14976 1311 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 NRKQ7Z2Y5 1582 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 A0A1B0GTQ1 180 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 TMEM120BA0PK00 339 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PDZK1P1A8MUH7 402 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 ZNF705GA8MUZ8 300 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 NVLO15381 856 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 GCM2O75603 506 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 WISP3O95389 354 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PRB2P02812 416 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 MRPL3P09001 348 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 OR56A5P0C7T3 313 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 RBM34P42696 430 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 UBE2MP61081 183 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 RPS23P62266 143 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 IRF8Q02556 426 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 EIF4EBP1Q13541 118 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 LINC00483Q53H64 154 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PIP5KL1Q5T9C9 394 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 HORMAD1Q86X24 394 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 C11orf72Q8NBR9 251 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 SYNPRQ8TBG9 265 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 RGP1Q92546 391 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 FRZBQ92765 325 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PTX4Q96A99 478 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 NARS2Q96I59 477 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 BTN2A3PQ96KV6 586 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 NAP1L5Q96NT1 182 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 HSD17B10Q99714 261 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 CHMP4BQ9H444 224 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 ZC4H2Q9NQZ6 224 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 ZNF282Q9UDV7 671 aaPredicted RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 MARF1Q9Y4F3 1742 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PIK3C2AO00443 1686 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 USP54Q70EL1 1684 aa3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 FAM208AQ9UK61 1670 aaKnown RBP3.27□□□□□ -1.89
CKS1BP1-201ENST00000555221 PHRF1Q9P1Y6 1649 aaKnown RBP3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 IGSF9BQ9UPX0 1349 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 A0A0U1RQV1 116 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 GOLGA6L7A0A1B0GV03 622 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 DNASE2O00115 360 aaPredicted RBP3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 BPY2O14599 106 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 XRCC2O43543 280 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 APCSP02743 223 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 RHOXF2BP0C7M4 288 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 POLR2MP0CAP2 368 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 CLDN8P56748 225 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 DNAJC3Q13217 504 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 ZNF266Q14584 549 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 C5orf47Q569G3 176 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 Q5W150 140 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 TTC19Q6DKK2 380 aaPredicted RBP3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 BHLHA15Q7RTS1 189 aaPredicted RBP3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 WDR86Q86TI4 376 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 ZNF695Q8IW36 515 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 VKORC1L1Q8N0U8 176 aa3.26□□□□□ -1.89
CKS1BP1-201ENST00000555221 FAM184AQ8NB25 1140 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms