RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SFTPBP07988 381 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 GAAP10253 952 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CXCL2P19875 107 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 AMY2BP19961 511 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PTBP1P26599 531 aaKnown RBP eCLIP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 H2BFSP57053 126 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CSNK2A1P68400 391 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TAGLNQ01995 201 aaKnown RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 UNC119Q13432 240 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 DYRK1AQ13627 763 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 RBMS2Q15434 407 aaKnown RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 AKIRIN2Q53H80 203 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ABHD17BQ5VST6 288 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CD276Q5ZPR3 534 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CLEC9AQ6UXN8 241 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 UNQ6126/PRO20091Q6UXV3 157 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF813Q6ZN06 617 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PPP1R32Q7Z5V6 425 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 C12orf45Q8N5I9 185 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CSNK2A3Q8NEV1 391 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR9K2Q8NGE7 335 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR10D3Q8NH80 312 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 FNDC9Q8TBE3 224 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ELP5Q8TE02 316 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 RAB3CQ96E17 227 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF799Q96GE5 643 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 IMMP1LQ96LU5 166 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SORCS2Q96PQ0 1159 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SIGLEC12Q96PQ1 595 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CCNL2Q96S94 520 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM59Q9BXS4 323 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 POTEKPQ9BYX7 375 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SLA2Q9H6Q3 261 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 LDAHQ9H6V9 325 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 RANBP3Q9H6Z4 567 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 FAM206AQ9NX38 181 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 KCNK7Q9Y2U2 307 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MEIKINA0A087WXM9 373 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 A0A1B0GV50 99 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SPAARA0A1B0GVQ0 90 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 WIPF3A6NGB9 483 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 F5H5P2 479 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SCGB1D2O95969 90 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CSTBP04080 98 aaKnown RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ERCC1P07992 297 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR4E1P0C645 316 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 LIFP15018 202 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MSR1P21757 451 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CD34P28906 385 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MAGEA5P43359 124 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 IL13RA1P78552 427 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TSC22D1Q15714 1073 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TEX30Q5JUR7 227 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ELP2Q6IA86 826 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 BAIAP2L2Q6UXY1 529 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 GLDNQ6ZMI3 551 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MOB3CQ70IA8 216 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CREB3L2Q70SY1 520 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SLC16A14Q7RTX9 510 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM200AQ86VY9 491 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ELMOD2Q8IZ81 293 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 GCNT2Q8N0V5 402 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SLC22A24Q8N4F4 322 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PAQR4Q8N4S7 273 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 OR4K15Q8NH41 348 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 FBXO17Q96EF6 278 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF471Q9BX82 626 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MFFQ9GZY8 342 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PARP12Q9H0J9 701 aaKnown RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CST11Q9H112 138 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 PRO3102Q9H379 93 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 C12orf10Q9HB07 376 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SCP2D1Q9UJQ7 156 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SPG11Q96JI7 2443 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ANKRD11Q6UB99 2663 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 A0A1B0GTI1 187 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 C7orf66A4D0T2 115 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 RAB27BO00194 218 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ADAP1O75689 374 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 NXPH3O95157 252 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CSF1P09603 554 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 UBCP0CG48 685 aaKnown RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TRAPPC2P0DI81 140 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TRAPPC2BP0DI82 140 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SULT1A3P0DMM9 295 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SULT1A4P0DMN0 295 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 FGF5P12034 268 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 MSX1P28360 303 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ZNF84P51523 738 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CCL11P51671 97 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 CAPZA1P52907 286 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 S100A10P60903 97 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 ROM1Q03395 351 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SCRN3Q0VDG4 424 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 GK2Q14410 553 aaPredicted RBP4.92□□□□□ -1.62
LIMA1-215ENST00000552823 IL11RAQ14626 422 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 NDUFA5Q16718 116 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SP6Q3SY56 376 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 TMEM164Q5U3C3 297 aa4.92□□□□□ -1.62
LIMA1-215ENST00000552823 SEZ6L2Q6UXD5 910 aa4.92□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms