RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 HKR1P10072 659 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC6A9P48067 706 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FOXL2P58012 376 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SSBP1Q04837 148 aaKnown RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FAM76BQ5HYJ3 339 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 C1orf53Q5VUE5 145 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF343Q6P1L6 599 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM92Q6UXU6 159 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 Q6ZS52 159 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MED25Q71SY5 747 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF561Q8N587 486 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OR13C9Q8NGT0 318 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 PHOSPHO2Q8TCD6 241 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ASB17Q8WXJ9 295 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FGGYQ96C11 551 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 PFDN5Q99471 154 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 LMF2Q9BU23 707 aaKnown RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 NMES1Q9C002 83 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SH3BGRL3Q9H299 93 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 BANF2Q9H503 90 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SPACA1Q9HBV2 294 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 G6PC2Q9NQR9 355 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC17A5Q9NRA2 495 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 CD207Q9UJ71 328 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MFNGO00587 321 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TXNDC12O95881 172 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RENP00797 406 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MT-ND4LP03901 98 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 CSTBP04080 98 aaKnown RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MYF5P13349 255 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 BCKDHBP21953 392 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 EIF2S3P41091 472 aaKnown RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 KIR2DL1P43626 348 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 BLKP51451 505 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 GFERP55789 205 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 IL15RAQ13261 267 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 NSDHLQ15738 373 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ACKR1Q16570 336 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MIDNQ504T8 468 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 LCN10Q6JVE6 187 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF574Q6ZN55 896 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RTL10Q7L3V2 364 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF383Q8NA42 475 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 CCDC54Q8NEL0 328 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TSTD1Q8NFU3 115 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC26A10Q8NG04 563 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OR4K15Q8NH41 348 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 GPR119Q8TDV5 335 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 AQP10Q96PS8 301 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 G6PC3Q9BUM1 346 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SMOC1Q9H4F8 434 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ASH2LQ9UBL3 628 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 METRNQ9UJH8 293 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 COA3Q9Y2R0 106 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM184BQ9Y519 407 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MMP24Q9Y5R2 645 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 IGLV1-36A0A0B4J1U3 117 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF729A6NN14 1252 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF264O43296 627 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RAMP1O60894 148 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF432O94892 652 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SFTPBP07988 381 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC35E2P0CK97 266 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OR13C7P0DN81 318 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 GLI4P10075 376 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 CD37P11049 281 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RPS2P15880 293 aaKnown RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZNF708P17019 499 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FCARP24071 287 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 THBS4P35443 961 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 GABRA4P48169 554 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SULT1A1P50225 295 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ASCL1P50553 236 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 DVL1P1P54792 670 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM50BP56557 158 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 STARD6P59095 220 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MEF2DQ14814 521 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RSPO4Q2I0M5 234 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FNDC7Q5VTL7 733 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 AADACL3Q5VUY0 350 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 TMEM268Q5VZI3 342 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 FDX2Q6P4F2 183 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 PRSS54Q6PEW0 395 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SPNS3Q6ZMD2 512 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC43A2Q8N370 569 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ARRDC1Q8N5I2 433 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ZDHHC22Q8N966 263 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 BAHD1Q8TBE0 780 aaPredicted RBP4.31□□□□□ -1.72
LIMA1-214ENST00000552783 ELSPBP1Q96BH3 223 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 C14orf144Q96I85 54 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 MEGF10Q96KG7 1140 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 GNRHR2Q96P88 292 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 RARRES2Q99969 163 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OCSTAMPQ9BR26 566 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OR11A1Q9GZK7 315 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 OR10A5Q9H207 317 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 SLC26A1Q9H2B4 701 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 PRDM13Q9H4Q3 707 aa4.31□□□□□ -1.72
LIMA1-214ENST00000552783 LYRM4Q9HD34 91 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms