RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 PGA3P0DJD8 388 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GLB1P16278 677 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF20P17024 532 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 HLA-GP17693 338 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PTGDSP41222 190 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 P2RY4P51582 365 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PLPPR5Q32ZL2 321 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PAN3Q58A45 887 aaKnown RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 LCN10Q6JVE6 187 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 FAM122CQ6P4D5 195 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 FAM57BQ71RH2 274 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 C1QL2Q7Z5L3 287 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 HOGA1Q86XE5 327 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 UEVLDQ8IX04 471 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ZSCAN4Q8NAM6 433 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 OR5AP2Q8NGF4 316 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ELP5Q8TE02 316 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ARHGAP5-AS1Q96IT6 56 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 OR5B2Q96R09 309 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 RNF126Q9BV68 326 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 CHMP1AQ9HD42 196 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 SHPKQ9UHJ6 478 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 B3GALT5Q9Y2C3 310 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 RPH3AQ9Y2J0 694 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 IGKV1-9A0A0C4DH69 117 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 DBX1A6NMT0 343 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF878C9JN71 531 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GDF9O60383 454 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 CDC14BO60729 498 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 DUS4LO95620 317 aaKnown RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ACTL6AO96019 429 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 F12P00748 615 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GLULP15104 373 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ADCYAP1P18509 176 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PSMB6P28072 239 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 RIPPLY1Q0D2K3 151 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GUCA2BQ16661 112 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM88Q6PEY1 159 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 MISPQ8IVT2 679 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 INO80EQ8NBZ0 244 aaPredicted RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PAQR8Q8TEZ7 354 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 RAB3CQ96E17 227 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 OR6C1Q96RD1 312 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ARPC5LQ9BPX5 153 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 UQCC2Q9BRT2 126 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM231Q9H6L2 316 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PNRC2Q9NPJ4 139 aaKnown RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 OR5AC2Q9NZP5 309 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 GLS2Q9UI32 602 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 PRRC2CQ9Y520 2896 aaKnown RBP6.62□□□□□ -1.35
LIMA1-213ENST00000552720 NCKAP5O14513 1909 aa6.62□□□□□ -1.35
LIMA1-213ENST00000552720 ARPC4-TTLL3A0A0A6YYG9 625 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 CRTAPO75718 401 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 IGFBP4P22692 258 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 MPZP25189 248 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 CX3CR1P49238 355 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 DHPSP49366 369 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF41P51814 821 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 SUPT4H1P63272 117 aaKnown RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 NKAIN1Q4KMZ8 207 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 PRAMEF20Q5VT98 475 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 RHBDD2Q6NTF9 364 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 CRIP3Q6Q6R5 217 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 CLEC18BQ6UXF7 455 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 NOXO1Q8NFA2 376 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR4K17Q8NGC6 315 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR2AJ1Q8NGZ0 328 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR6S1Q8NH40 331 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR51F2Q8NH61 342 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 TMED6Q8WW62 240 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 MARC2Q969Z3 335 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 PIK3IP1Q96FE7 263 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 GPER1Q99527 375 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 NKX6-2Q9C056 277 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 METTL7AQ9H8H3 244 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 MTCH2Q9Y6C9 303 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 A0A1W2PNV4 684 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 NPIPB13A6NJU9 1138 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 NPIPB4C9JG80 1138 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ABCD4O14678 606 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 CELA2AP08217 269 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 QDPRP09417 244 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 SRFP11831 508 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 HIST1H1DP16402 221 aaKnown RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 GABREP78334 506 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ARFRP1Q13795 201 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF169Q14929 603 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ANKRD55Q3KP44 614 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 PLEKHN1Q494U1 663 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 THEM4Q5T1C6 240 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 PUSL1Q8N0Z8 303 aaKnown RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 DTWD2Q8NBA8 298 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR13G1Q8NGZ3 307 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 TERB2Q8NHR7 220 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 OR10C1Q96KK4 312 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 RTBDNQ9BSG5 229 aaPredicted RBP6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ST6GALNAC5Q9BVH7 336 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM59Q9BXS4 323 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 DNTTIP1Q9H147 329 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF768Q9H5H4 540 aaKnown RBP6.61□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms