RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SPEM2Q0P670 501 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 PLCXD2Q0VAA5 305 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 PDZK1IP1Q13113 114 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RAB32Q13637 225 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RBM39Q14498 530 aaKnown RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 ELAVL1Q15717 326 aaKnown RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM128Q5BJH2 165 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RPL7L1Q6DKI1 246 aaKnown RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 AWAT2Q6E213 333 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF585AQ6P3V2 769 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 OR5AS1Q8N127 324 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 SLC22A24Q8N4F4 322 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 PNLDC1Q8NA58 520 aaKnown RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 TERB2Q8NHR7 220 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 ADAMTS17Q8TE56 1095 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 SFT2D1Q8WV19 159 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RNF133Q8WVZ7 376 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 MAFIPQ8WZ33 124 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 C11orf40Q8WZ69 217 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 TGM7Q96PF1 710 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 UQCC2Q9BRT2 126 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RTBDNQ9BSG5 229 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 WWTR1Q9GZV5 400 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 PBOV1Q9GZY1 135 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 SLC2A4RGQ9NR83 387 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 SLC22A11Q9NSA0 550 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 SOHLH2Q9NX45 425 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 FBLN5Q9UBX5 448 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 LPAR3Q9UBY5 353 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 RALGAPA1Q6GYQ0 2036 aa4.8□□□□□ -1.64
LIMA1-212ENST00000552491 COL5A1P20908 1838 aaPredicted RBP4.8□□□□□ -1.64
LIMA1-212ENST00000552491 C5orf63A6NC05 138 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 FAM157AC9JC47 383 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 H3BMH7 237 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SDCBPO00560 298 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AGPAT2O15120 278 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 MBTPS2O43462 519 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SYT7O43581 403 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 LRP3O75074 770 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 EIF3GO75821 320 aaKnown RBP eCLIP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SFT2D2O95562 160 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 MPIG6BO95866 241 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 APOC1P02654 83 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 IFNA4P05014 189 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 LYL1P12980 280 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RPS2P15880 293 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF17P17021 662 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 NME2P22392 152 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 GLRA1P23415 457 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AKR1C3P42330 323 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PTGFRP43088 359 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 OR3A4PP47883 348 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 EMP2P54851 167 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 DCAF7P61962 342 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HGFACQ04756 655 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 IL15RAQ13261 267 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 MFAP5Q13361 173 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 TDGQ13569 410 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HABP2Q14520 560 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RNFT1Q5M7Z0 435 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AVPI1Q5T686 147 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AADACL3Q5VUY0 350 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PRSS54Q6PEW0 395 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 GLIPR1L1Q6UWM5 242 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RBMS3Q6XE24 437 aaKnown RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 GRINAQ7Z429 371 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 DTX1Q86Y01 620 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HIST2H2ABQ8IUE6 130 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SKA3Q8IX90 412 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF248Q8NDW4 579 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 OR13G1Q8NGZ3 307 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 OR51E1Q8TCB6 317 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SLAMF6Q96DU3 332 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SAT2Q96F10 170 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SMIM8Q96KF7 97 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 NUDT22Q9BRQ3 303 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 COL25A1Q9BXS0 654 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SLC5A7Q9GZV3 580 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SLC26A1Q9H2B4 701 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 RAB18Q9NP72 206 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 GPR27Q9NS67 375 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ANAPC10Q9UM13 185 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 PCDHGA1Q9Y5H4 931 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 FLVCR1Q9Y5Y0 555 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 EXPH5Q8NEV8 1989 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CABIN1Q9Y6J0 2220 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CEACAM18A8MTB9 384 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 METTL12A8MUP2 240 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 TMEM150CB9EJG8 249 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 E9PLN8 166 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 HTR3BO95264 441 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 AHSA1O95433 338 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SERPINA5P05154 406 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CHRM2P08172 466 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 FCGR3AP08637 254 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 SFTA3P0C7M3 94 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 ZNF93P35789 620 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-212ENST00000552491 CAV2P51636 162 aa4.79□□□□□ -1.64
LIMA1-212ENST00000552491 POU3F1Q03052 451 aaPredicted RBP4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms