RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 ZCCHC4Q9H5U6 513 aa8.22□□□□□ -1.09
LIMA1-211ENST00000552338 CGGBP1Q9UFW8 167 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-211ENST00000552338 SSR3Q9UNL2 185 aa8.22□□□□□ -1.09
LIMA1-211ENST00000552338 RNF115Q9Y4L5 304 aa8.22□□□□□ -1.09
LIMA1-211ENST00000552338 CEPT1Q9Y6K0 416 aa8.22□□□□□ -1.09
LIMA1-211ENST00000552338 PKDREJQ9NTG1 2253 aa8.22□□□□□ -1.09
LIMA1-211ENST00000552338 A0A1B0GVI7 797 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 DPPA5A6NC42 116 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 VSTM5A8MXK1 200 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ATP6V1G2-DDX39BF2Z307 99 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 P2RY10O00398 339 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TBX1O43435 398 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM127O75204 238 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ARL6IP5O75915 188 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 RGS9O75916 674 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ALDOBP05062 364 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 CD2P06729 351 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ADH4P08319 380 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 GADD45AP24522 165 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ACKR3P25106 362 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 APOBEC3AP31941 199 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 THBS4P35443 961 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 RIPPLY1Q0D2K3 151 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 PSG7Q13046 419 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 MSMPQ1L6U9 139 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ZNF672Q499Z4 452 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 FAM76BQ5HYJ3 339 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ASPHD2Q6ICH7 369 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 PGAP1Q75T13 922 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TPRA1Q86W33 373 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 LYPD6Q86Y78 171 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 SERPINA12Q8IW75 414 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 SEMA6DQ8NFY4 1073 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 OR2AE1Q8NHA4 323 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 RAB2BQ8WUD1 216 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 MRPL24Q96A35 216 aaKnown RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 DGCR14Q96DF8 476 aaKnown RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 CMBLQ96DG6 245 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TRMT61AQ96FX7 289 aaKnown RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TECTBQ96PL2 329 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 CHST5Q9GZS9 411 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 SLC22A4Q9H015 551 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 POFUT1Q9H488 388 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ABCB9Q9NP78 766 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 BRD7Q9NPI1 651 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 CA10Q9NS85 328 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 TXNL4BQ9NX01 149 aaKnown RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 MRPL15Q9P015 296 aaKnown RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 FBXO9Q9UK97 447 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-211ENST00000552338 GSTK1Q9Y2Q3 226 aa8.21□□□□□ -1.1
LIMA1-211ENST00000552338 ADGRG4Q8IZF6 3080 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 ZNF816-ZNF321PA0A0X1KG74 233 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 ANKRD61A6NGH8 418 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 A6NNC1 897 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 CD300LBA8K4G0 201 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PRSS44E7EML9 344 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 E7EQL1 145 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PYCARD-AS1I3L0S3 204 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 AIREO43918 545 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PTBP3O95758 552 aaKnown RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 OCM2P0CE71 109 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 FAM157BP0CG42 384 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PRF1P14222 555 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SRMP19623 302 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 MMP15P51511 669 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SPOCK1Q08629 439 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SNTB2Q13425 540 aaKnown RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 ADIPOQQ15848 244 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 MOGQ16653 247 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM255AQ5JRV8 349 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SP5Q6BEB4 398 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SLC22A25Q6T423 547 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 MEX3BQ6ZN04 569 aaKnown RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 FTMTQ8N4E7 242 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 DNAAF1Q8NEP3 725 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 OR8G5Q8NG78 346 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 OR5D14Q8NGL3 314 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SYNPRQ8TBG9 265 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 UBASH3BQ8TF42 649 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 TMEM106AQ96A25 262 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 ADAT3Q96EY9 351 aaPredicted RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 C14orf79Q96F83 325 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 DHRS9Q9BPW9 319 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 SLC30A2Q9BRI3 323 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 TMED9Q9BVK6 235 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 FAM192AQ9GZU8 254 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 OR51E2Q9H255 320 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PPIL3Q9H2H8 161 aaKnown RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 PURGQ9UJV8 347 aaKnown RBP8.2□□□□□ -1.1
LIMA1-211ENST00000552338 DHDHQ9UQ10 334 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 CMAHPQ9Y471 501 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 MPC1Q9Y5U8 109 aa8.2□□□□□ -1.1
LIMA1-211ENST00000552338 ROS1P08922 2347 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 DSCAMO60469 2012 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 PNMA8CA0A1B0GUJ8 204 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 MEGF11A6BM72 1044 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 SLC22A1O15245 554 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 GMDSO60547 372 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 CTAG2O75638 210 aa8.19□□□□□ -1.1
LIMA1-211ENST00000552338 GCH1P30793 250 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms