RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 MFSD8Q8NHS3 518 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 MITD1Q8WV92 249 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 ZNF837Q96EG3 531 aaPredicted RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 OR10C1Q96KK4 312 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 IGKV1-9A0A0C4DH69 117 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 A0A0D9SG52 128 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 ANKUB1A6NFN9 424 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 A6NIZ1 184 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 CD8AP01732 235 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 UBBP0CG47 229 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 AGTR1P30556 359 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 CALCRP30988 508 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 CX3CR1P49238 355 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 CLDN17P56750 224 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 RAP1BP61224 184 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 RAP1AP62834 184 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 RPS27AP62979 156 aaKnown RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 UBA52P62987 128 aaKnown RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 C17orf82Q86X59 251 aaPredicted RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 OR51T1Q8NGJ9 327 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 TSNAXQ99598 290 aaKnown RBP13.29□□□□□ -0.28
USP28-214ENST00000545540 LDAHQ9H6V9 325 aa13.29□□□□□ -0.28
USP28-214ENST00000545540 TUBAL3A6NHL2 446 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 STMND1H3BQB6 276 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 SULT1C2O00338 296 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ABCD4O14678 606 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ISG15P05161 165 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 GP1BAP07359 652 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 FOSL2P15408 326 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 AKR1D1P51857 326 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ANKRD55Q3KP44 614 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 GTPBP8Q8N3Z3 284 aaPredicted RBP13.28□□□□□ -0.28
USP28-214ENST00000545540 OR4K17Q8NGC6 315 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 DYRK2Q92630 601 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 TMEM59Q9BXS4 323 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 DSPP15924 2871 aaKnown RBP13.28□□□□□ -0.28
USP28-214ENST00000545540 IGKV1D-8A0A087WSZ0 117 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ANGPTL7O43827 346 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 FBXO24O75426 580 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 SCRG1O75711 98 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 RCC1P18754 421 aaPredicted RBP13.28□□□□□ -0.28
USP28-214ENST00000545540 GABRR1P24046 479 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 PSMB6P28072 239 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 GABREP78334 506 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 PAN3Q58A45 887 aaKnown RBP13.28□□□□□ -0.28
USP28-214ENST00000545540 CLEC18BQ6UXF7 455 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 OR5AP2Q8NGF4 316 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 UCN2Q96RP3 112 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 RNF126Q9BV68 326 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ZNF407Q9C0G0 2248 aa13.28□□□□□ -0.28
USP28-214ENST00000545540 ZNF705EA8MWA4 302 aaPredicted RBP13.27□□□□□ -0.28
USP28-214ENST00000545540 F10P00742 488 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 ZNF43P17038 809 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 AMY2BP19961 511 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 AKR1C3P42330 323 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 MEF2DQ14814 521 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 MOB3CQ70IA8 216 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 OR2AE1Q8NHA4 323 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 TMEM230Q96A57 120 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 WDR77Q9BQA1 342 aaPredicted RBP13.27□□□□□ -0.28
USP28-214ENST00000545540 CRB3Q9BUF7 120 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 CPAMD8Q8IZJ3 1885 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 LOC390937A0A1W2PQ73 354 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 FARS2O95363 451 aaKnown RBP13.27□□□□□ -0.28
USP28-214ENST00000545540 ADCYAP1P18509 176 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 RRADP55042 308 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 PHYHD1Q5SRE7 291 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 PUSL1Q8N0Z8 303 aaKnown RBP13.27□□□□□ -0.28
USP28-214ENST00000545540 MVB12AQ96EY5 273 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 ZNF416Q9BWM5 594 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 SLC25A32Q9H2D1 315 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 ZNF768Q9H5H4 540 aaKnown RBP13.27□□□□□ -0.28
USP28-214ENST00000545540 TREM1Q9NP99 234 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 SDHAF3Q9NRP4 125 aa13.27□□□□□ -0.28
USP28-214ENST00000545540 A0A1B0GV50 99 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 HSPB2A8KAH6 182 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 CDC14BO60729 498 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 TMEM127O75204 238 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 CRHP06850 196 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 BLVRBP30043 206 aaPredicted RBP13.27□□□□□ -0.29
USP28-214ENST00000545540 APOBEC1P41238 236 aaKnown RBP13.27□□□□□ -0.29
USP28-214ENST00000545540 OR3A2P47893 321 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 CSNK2A1P68400 391 aaPredicted RBP13.27□□□□□ -0.29
USP28-214ENST00000545540 FGL1Q08830 312 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 HSPB2Q16082 182 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 ZNF585AQ6P3V2 769 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 OGFOD3Q6PK18 319 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 C6orf201Q7Z4U5 140 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 NKAIN3Q8N8D7 197 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 CSNK2A3Q8NEV1 391 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 RBM24Q9BX46 236 aaKnown RBP13.27□□□□□ -0.29
USP28-214ENST00000545540 NKX6-2Q9C056 277 aaPredicted RBP13.27□□□□□ -0.29
USP28-214ENST00000545540 MTCH2Q9Y6C9 303 aa13.27□□□□□ -0.29
USP28-214ENST00000545540 GLB1P16278 677 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 CTRB1P17538 263 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 RAB32Q13637 225 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 CTRB2Q6GPI1 263 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 PGAP1Q75T13 922 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 ZFP82Q8N141 532 aa13.26□□□□□ -0.29
USP28-214ENST00000545540 NFAM1Q8NET5 270 aaPredicted RBP13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms