RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 CHMP1BQ7LBR1 199 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 NUFIP2Q7Z417 695 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 C1QL2Q7Z5L3 287 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 FAM109AQ8N4B1 249 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 NAXEQ8NCW5 288 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 OR10K1Q8NGX5 313 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 C7orf50Q9BRJ6 194 aaKnown RBP12.69□□□□□ -0.38
CLIP1-216ENST00000541410 OR2H1Q9GZK4 316 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 MED28Q9H204 178 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 GHITMQ9H3K2 345 aa12.69□□□□□ -0.38
CLIP1-216ENST00000541410 M0QYG6 137 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 RAB27BO00194 218 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 MPIG6BO95866 241 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 HLA-HP01893 362 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 CSN2P05814 226 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 TRAPPC2P0DI81 140 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 TRAPPC2BP0DI82 140 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 GNB3P16520 340 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 CXCL3P19876 107 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 ANXA7P20073 488 aaKnown RBP12.68□□□□□ -0.38
CLIP1-216ENST00000541410 MRPS15P82914 257 aaKnown RBP12.68□□□□□ -0.38
CLIP1-216ENST00000541410 QRFPP83859 136 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 FAPQ12884 760 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 PGAP1Q75T13 922 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 OR4S1Q8NGB4 309 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 OR11H7Q8NGC8 314 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF486Q96H40 463 aaPredicted RBP12.68□□□□□ -0.38
CLIP1-216ENST00000541410 CUL9Q8IWT3 2517 aa12.68□□□□□ -0.38
CLIP1-216ENST00000541410 ARPC4-TTLL3A0A0A6YYG9 625 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF503-AS2A6NEH8 195 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 PLATP00750 562 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 NUBP1P53384 320 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 SOX8P57073 446 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 SCRN3Q0VDG4 424 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 PABPC1L2AQ5JQF8 200 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 OLFML2AQ68BL7 652 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF782Q6ZMW2 699 aaPredicted RBP12.67□□□□□ -0.38
CLIP1-216ENST00000541410 DNM1P46Q6ZS02 220 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 Q6ZTK2 550 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 CPEB3Q8NE35 698 aaKnown RBP12.67□□□□□ -0.38
CLIP1-216ENST00000541410 OR51S1Q8NGJ8 323 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 C15orf40Q8WUR7 153 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 NUDCD2Q8WVJ2 157 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 SEC22CQ9BRL7 303 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 LRFN3Q9BTN0 628 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 FAM117AQ9C073 453 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 SELENOIQ9C0D9 397 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 OR51J1Q9H342 316 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 NOX3Q9HBY0 568 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 GPR173Q9NS66 373 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 COPZ2Q9P299 210 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF222Q9UK12 451 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 RAB22AQ9UL26 194 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 TIMM10BQ9Y5J6 103 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 CACNA1GO43497 2377 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 PRR14LQ5THK1 2151 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 IGKV3D-15A0A087WSY6 115 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 TRGV5A0A0B4J1U4 118 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 A0A0U1RQV5 110 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 IGLV3-1P01715 115 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 RAD52P43351 418 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 RIPPLY2Q5TAB7 128 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 GVQW1Q8N7I0 195 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 GPX8Q8TED1 209 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 REEP6Q96HR9 211 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 UQCC2Q9BRT2 126 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 OR10A2Q9H208 303 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 DLL3Q9NYJ7 618 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF224Q9NZL3 707 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 UPB1Q9UBR1 384 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 PRSS50Q9UI38 385 aa12.67□□□□□ -0.38
CLIP1-216ENST00000541410 A0A0A6YYD4 124 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 METTL21EPA6NDL7 271 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 TM4SF5O14894 197 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 BPNT1O95861 308 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 ERCC1P07992 297 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-216ENST00000541410 FCGR2AP12318 317 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 KISS1Q15726 138 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 CRIP3Q6Q6R5 217 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 MCEMP1Q8IX19 187 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 TMEM178AQ8NBL3 297 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 TMEM45BQ96B21 275 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 C1orf147Q96MC9 270 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-216ENST00000541410 ELL3Q9HB65 397 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-216ENST00000541410 KLK13Q9UKR3 277 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 V9GYS6 101 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 DMXL2Q8TDJ6 3036 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 C7orf66A4D0T2 115 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 OR6C6A6NF89 314 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 PEX14O75381 377 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 CRTAPO75718 401 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-216ENST00000541410 RCVRNP35243 200 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 CDNFQ49AH0 187 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 NOXA1Q86UR1 476 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 ZNF100Q8IYN0 542 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 APH1AQ96BI3 265 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 WDYHV1Q96HA8 205 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 TINAGL1Q9GZM7 467 aaPredicted RBP12.66□□□□□ -0.38
CLIP1-216ENST00000541410 EMC3Q9P0I2 261 aa12.66□□□□□ -0.38
CLIP1-216ENST00000541410 ING4Q9UNL4 249 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms