RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 FBXW12Q6X9E4 464 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 FAM57BQ71RH2 274 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 PRSS35Q8N3Z0 413 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF283Q8N7M2 679 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 ZFP41Q8N8Y5 198 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 OR8B12Q8NGG6 310 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 SPTSSAQ969W0 71 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 SPSB4Q96A44 273 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 APOBEC3DQ96AK3 386 aaPredicted RBP11.1□□□□□ -0.63
CCDC42-202ENST00000539522 PPP1R3EQ9H7J1 279 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 NIPAL2Q9H841 368 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 BRD7Q9NPI1 651 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 CBLN4Q9NTU7 201 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 GSTK1Q9Y2Q3 226 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 CMAHPQ9Y471 501 aa11.1□□□□□ -0.63
CCDC42-202ENST00000539522 MAP1AP78559 2803 aaPredicted RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 J3QW42 95 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 GPX5O75715 221 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 RPP14O95059 124 aaKnown RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 SERPINA3P01011 423 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 TTRP02766 147 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 RAF1P04049 648 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 PAX1P15863 534 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 FGF9P31371 208 aaPredicted RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 PSMB10P40306 273 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 ALDH3B1P43353 468 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 KIR3DL2P43630 455 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 MMP16P51512 607 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CCR9P51686 369 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 ALKBH1Q13686 389 aaKnown RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CDK5R1Q15078 307 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CD200R1LQ6Q8B3 271 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 ARL9Q6T311 187 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 SYNPRQ8TBG9 265 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 GHSRQ92847 366 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 TMEM203Q969S6 136 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 HAVCR1Q96D42 359 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CMBLQ96DG6 245 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CHCHD6Q9BRQ6 235 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 REPIN1Q9BWE0 567 aaKnown RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 ZNF701Q9NV72 531 aaPredicted RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 EIF3KQ9UBQ5 218 aaKnown RBP11.09□□□□□ -0.63
CCDC42-202ENST00000539522 SLC22A13Q9Y226 551 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 SPEF1Q9Y4P9 236 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 CELSR1Q9NYQ6 3014 aa11.09□□□□□ -0.63
CCDC42-202ENST00000539522 LOC100506127A0A0U1RQW1 187 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 A0A1B0GTI1 187 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 PNMA8CA0A1B0GUJ8 204 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 hCG_38984A0A1B0GV85 526 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 A0A1B0GWJ7 208 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 ZSCAN5BA6NJL1 495 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 B9A039 149 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 LY6HO94772 140 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 APOC1P02654 83 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 KITLGP21583 273 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 SLC6A9P48067 706 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 EVX1P49640 407 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 VBP1P61758 197 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 LSM3P62310 102 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 RPS25P62851 125 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 FAM3AP98173 230 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 SLC3A1Q07837 685 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 WDR38Q5JTN6 314 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 OR2T2Q6IF00 324 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 CATSPERDQ86XM0 798 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 FBXL14Q8N1E6 418 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 OR2G2Q8NGZ5 317 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 RPS4Y2Q8TD47 263 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 RPL3LQ92901 407 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 SMIM19Q96E16 107 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 CCL19Q99731 98 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 TMED9Q9BVK6 235 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 CACNG6Q9BXT2 260 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 PBOV1Q9GZY1 135 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 EXOSC4Q9NPD3 245 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 FRRS1LQ9P0K9 344 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 NUFIP1Q9UHK0 495 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 DUSP13Q9UII6 198 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 PURGQ9UJV8 347 aaKnown RBP11.08□□□□□ -0.64
CCDC42-202ENST00000539522 ZNF281Q9Y2X9 895 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 N6AMT1Q9Y5N5 214 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 R4GMQ9 66 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 NAV2Q8IVL1 2488 aa11.08□□□□□ -0.64
CCDC42-202ENST00000539522 TANC2Q9HCD6 1990 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 USF3Q68DE3 2245 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 TMEM269A0A1B0GVZ9 245 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 ACOD1A6NK06 481 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 MLNRO43193 412 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 RGS9O75916 674 aaPredicted RBP11.07□□□□□ -0.64
CCDC42-202ENST00000539522 NCR1O76036 304 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 IGHV4-39P01824 125 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 ANXA2P07355 339 aaKnown RBP11.07□□□□□ -0.64
CCDC42-202ENST00000539522 NAT2P11245 290 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 RAC2P15153 192 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 ACKR3P25106 362 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 KLF3P57682 345 aaPredicted RBP11.07□□□□□ -0.64
CCDC42-202ENST00000539522 RPS23P62266 143 aaKnown RBP11.07□□□□□ -0.64
CCDC42-202ENST00000539522 FABP5Q01469 135 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 SPCS2Q15005 226 aa11.07□□□□□ -0.64
CCDC42-202ENST00000539522 ZNF829Q3KNS6 432 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms