RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 ALG1L2C9J202 215 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF217O75362 1048 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 CSTBP04080 98 aaKnown RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 OR3A4PP47883 348 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 TGIF1Q15583 401 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 IGSF11Q5DX21 431 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM230Q96A57 120 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 SAT2Q96F10 170 aaPredicted RBP10□□□□□ -0.81
SYNE1-237ENST00000539504 LPAR5Q9H1C0 372 aa10□□□□□ -0.81
SYNE1-237ENST00000539504 K7EPK0 472 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 TSPAN15O95858 294 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 DAOP14920 347 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 HIST1H1DP16402 221 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 DAP3P51398 398 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 BIDP55957 195 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 DHRS11Q6UWP2 260 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM92Q6UXU6 159 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SHISA6Q6ZSJ9 500 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 ARRDC1Q8N5I2 433 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 FAM71E2Q8N5Q1 922 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 OR51T1Q8NGJ9 327 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 OR2AJ1Q8NGZ0 328 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 KCNG3Q8TAE7 436 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 FAM131CQ96AQ9 280 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 C14orf166Q9Y224 244 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 COLCA2A8K830 154 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SRSF10O75494 262 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 NAT2P11245 290 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 MPZP25189 248 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 CTHP32929 405 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 MMP16P51512 607 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 HABP2Q14520 560 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 CARD17Q5XLA6 110 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 C16orf47Q6ZP98 133 aaPredicted RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 ADIPOR1Q96A54 375 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 URM1Q9BTM9 101 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 EIF5A2Q9GZV4 153 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 DZANK1Q9NVP4 752 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 METTL12A8MUP2 240 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 PRAMEF26H0Y7S4 382 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SNU13P55769 128 aaKnown RBP9.99□□□□□ -0.81
SYNE1-237ENST00000539504 CHRFAM7AQ494W8 412 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 PLAC9Q5JTB6 97 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 OR2A2Q6IF42 318 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 MISPQ8IVT2 679 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 RNF133Q8WVZ7 376 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 AQP10Q96PS8 301 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SOX7Q9BT81 388 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SLC5A7Q9GZV3 580 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 TWSG1Q9GZX9 223 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 SLC26A1Q9H2B4 701 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 CUTCQ9NTM9 273 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 CYP8B1Q9UNU6 501 aa9.99□□□□□ -0.81
SYNE1-237ENST00000539504 IGHV5-51A0A0C4DH38 117 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 C9JQL5 133 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 C5orf67F2Z3F1 127 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 PRH1P02810 166 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 OR8U9P0C7N5 309 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 HOXB1P14653 301 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 RPL12P30050 165 aaKnown RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 HSF1Q00613 529 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ACTBL2Q562R1 376 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 C1orf189Q5VU69 101 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 CLEC9AQ6UXN8 241 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 C9orf40Q8IXQ3 194 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 OR8U1Q8NH10 309 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 CD300LFQ8TDQ1 290 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 DAZLQ92904 295 aaKnown RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ASCC3Q8N3C0 2202 aaKnown RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 SHISA8B8ZZ34 492 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 NME2P1O60361 137 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 DDAH2O95865 285 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 GSTP1P09211 210 aaKnown RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 FPR2P25090 351 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 FCGR2CP31995 323 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 FABP9Q0Z7S8 132 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 DEGS2Q6QHC5 323 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 H1FNTQ75WM6 255 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF721Q8TF20 911 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ASB10Q8WXI3 467 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM234Q8WY98 164 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 FAM206AQ9NX38 181 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 WBP1LQ9NX94 342 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 HS3ST3A1Q9Y663 406 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 A0A0A6YYD4 124 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 TMEM14DPA8MWL7 114 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 LINC01565O15544 149 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 CDC14BO60729 498 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 RAD51DO75771 328 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 HEXAP06865 529 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 QRFPP83859 136 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 FZD2Q14332 565 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ADAM5Q6NVV9 412 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 OR56B1Q8NGI3 324 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 OR13G1Q8NGZ3 307 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 SMIM8Q96KF7 97 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 S100A13Q99584 98 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 NAA11Q9BSU3 229 aaPredicted RBP9.98□□□□□ -0.81
SYNE1-237ENST00000539504 RSRP1Q9BUV0 290 aa9.98□□□□□ -0.81
SYNE1-237ENST00000539504 ZNF304Q9HCX3 659 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms