RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	ZNF556	Q9HAH1	456 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	TRIM36	Q9NQ86	728 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	POLE4	Q9NR33	117 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	PAPOLB	Q9NRJ5	636 aa	Known RBP	10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	NECAP2	Q9NVZ3	263 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	ERVK-18	Q9QC07	812 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	HIF3A	Q9Y2N7	669 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	STARD10	Q9Y365	291 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079	PCDHGB5	Q9Y5G0	923 aa		10.29	□□□□□ -0.76
CAPN1-223	ENST00000533079		A0A0U1RQK1	487 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	HTR3E	A5X5Y0	456 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079		A6NIZ1	184 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	IQCF6	A8MYZ5	107 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	GPR37	O15354	613 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	XPNPEP2	O43895	674 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR5F1	O95221	314 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	FBP1	P09467	338 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	SMIM18	P0DKX4	95 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	RPL5	P46777	297 aa	Known RBP	10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	RAP1B	P61224	184 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	RPL27	P61353	136 aa	Known RBP	10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	ESRRG	P62508	458 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	RAP1A	P62834	184 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	EGR3	Q06889	387 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	ST3GAL3	Q11203	375 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	AQP6	Q13520	282 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	RBM45	Q8IUH3	476 aa	Known RBP	10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR5AS1	Q8N127	324 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	SPERT	Q8NA61	448 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	OR11L1	Q8NGX0	322 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	PFN4	Q8NHR9	129 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	NPRL2	Q8WTW4	380 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	APOL4	Q9BPW4	351 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	FNDC11	Q9BVV2	318 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	FAM192A	Q9GZU8	254 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	SIRPD	Q9H106	197 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	ZNRD1	Q9P1U0	126 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079	FBLN5	Q9UBX5	448 aa		10.28	□□□□□ -0.76
CAPN1-223	ENST00000533079		A0A087WXM4	84 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	TRBV4-1	A0A0J9YWV2	114 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	ZNF816-ZNF321P	A0A0X1KG74	233 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	DPPA5	A6NC42	116 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	MLNR	O43193	412 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	NDUFA2	O43678	99 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	MRPS14	O60783	128 aa	Known RBP	10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	MITF	O75030	526 aa	Predicted RBP	10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	GAST	P01350	101 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	PRB2	P02812	416 aa	Predicted RBP	10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	CCDC159	P0C7I6	412 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	IFNGR2	P38484	337 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	YAP1	P46937	504 aa	Known RBP	10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	PIN1	Q13526	163 aa	Predicted RBP	10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	TRAM2	Q15035	370 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	C6orf141	Q5SZD1	244 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	LYPD2	Q6UXB3	125 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	IGFN1	Q86VF2	1251 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	TSPAN14	Q8NG11	270 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	OR52J3	Q8NH60	311 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	MOSPD2	Q8NHP6	518 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	SLC7A13	Q8TCU3	470 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	TMEM239	Q8WW34	195 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	LHX4	Q969G2	390 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	BLOC1S6	Q9UL45	172 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079	FAM96B	Q9Y3D0	163 aa		10.27	□□□□□ -0.77
CAPN1-223	ENST00000533079		A0A1B0GVI7	797 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	SMIM31	A0A1B0GVY4	71 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	OR6C6	A6NF89	314 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079		F5H5P2	479 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	RNASEK-C17orf49	H0YIS7	233 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	ECD	O95905	644 aa	Predicted RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	TFAP2A	P05549	437 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	POLR2I	P36954	125 aa	Known RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	GABARAPL2	P60520	117 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	LAPTM4A	Q15012	233 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	ANKDD1A	Q495B1	522 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	C1orf94	Q6P1W5	598 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	METAP1D	Q6UB28	335 aa	Predicted RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	RNF113B	Q8IZP6	322 aa	Known RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	AQP11	Q8NBQ7	271 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	OR5R1	Q8NH85	324 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	TMEM255B	Q8WV15	326 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	APOBEC3D	Q96AK3	386 aa	Predicted RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	DMRTB1	Q96MA1	342 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	C20orf141	Q9NUB4	165 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	CTSZ	Q9UBR2	303 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	NOP16	Q9Y3C1	178 aa	Known RBP	10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	MED31	Q9Y3C7	131 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	GMPPB	Q9Y5P6	360 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	KPTN	Q9Y664	436 aa		10.26	□□□□□ -0.77
CAPN1-223	ENST00000533079	AHCYL1	O43865	530 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	MPZL2	O60487	215 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	CLIC3	O95833	236 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	OSM	P13725	252 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	CRHBP	P24387	322 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	FPR3	P25089	353 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	GABRA5	P31644	462 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	GGT2	P36268	569 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	CD200	P41217	278 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	ALDH3B2	P48448	385 aa		10.25	□□□□□ -0.77
CAPN1-223	ENST00000533079	TAS2R41	P59536	307 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms