RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 PMPCAQ10713 525 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 CRIP3Q6Q6R5 217 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 ZADH2Q8N4Q0 377 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 C1orf147Q96MC9 270 aaPredicted RBP18.04■□□□□ 0.48
VPS28-209ENST00000528142 CACNG6Q9BXT2 260 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 B3GNT2Q9NY97 397 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 CLCF1Q9UBD9 225 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 PRSS50Q9UI38 385 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 PIGLQ9Y2B2 252 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 DMXL2Q8TDJ6 3036 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 DNAJC13O75165 2243 aa18.04■□□□□ 0.48
VPS28-209ENST00000528142 TMEM14DPA8MWL7 114 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 AQP7O14520 342 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 TCRBP04435 133 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 UBE2V2Q15819 145 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 OR2AE1Q8NHA4 323 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 REEP6Q96HR9 211 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 COPZ2Q9P299 210 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 NUBP2Q9Y5Y2 271 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 ALG5Q9Y673 324 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 APC2O95996 2303 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 LAMA5O15230 3695 aa18.03■□□□□ 0.48
VPS28-209ENST00000528142 HCKP08631 526 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 ACKR3P25106 362 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 PRSS3P35030 304 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 MOGAT2Q3SYC2 334 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 TMEM255AQ5JRV8 349 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 OLFML2AQ68BL7 652 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 AWAT2Q6E213 333 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 OR6F1Q8NGZ6 308 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 GMPPAQ96IJ6 420 aaPredicted RBP18.02■□□□□ 0.48
VPS28-209ENST00000528142 GAL3ST1Q99999 423 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 PLSCR2Q9NRY7 297 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 SSUH2Q9Y2M2 353 aa18.02■□□□□ 0.48
VPS28-209ENST00000528142 MRPS28Q9Y2Q9 187 aaKnown RBP18.02■□□□□ 0.48
VPS28-209ENST00000528142 ZNF503-AS2A6NEH8 195 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 NAP1L6A6NFF2 107 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 RAB27BO00194 218 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 GMDSO60547 372 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 RBBP9O75884 186 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 CCNKO75909 580 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 HLA-HP01893 362 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 OR3A4PP47883 348 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 CCR6P51684 374 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 GUCA2AQ02747 115 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 TNK1Q13470 666 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 ZNF169Q14929 603 aaPredicted RBP18.02■□□□□ 0.47
VPS28-209ENST00000528142 GLIPR1L1Q6UWM5 242 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 SEMA6DQ8NFY4 1073 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 GPX8Q8TED1 209 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 RGCCQ9H4X1 137 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 C12orf49Q9H741 205 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 ZNF391Q9UJN7 358 aa18.02■□□□□ 0.47
VPS28-209ENST00000528142 METTL21EPA6NDL7 271 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 WIPF3A6NGB9 483 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 SS18L1O75177 396 aaPredicted RBP18.01■□□□□ 0.47
VPS28-209ENST00000528142 FBXW9Q5XUX1 488 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 COLCA1Q6ZS62 124 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 OR2W3Q7Z3T1 314 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 UBASH3BQ8TF42 649 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 ITFG2Q969R8 447 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 TAAR6Q96RI8 345 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 C1QTNF5Q9BXJ0 243 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 GLRX2Q9NS18 164 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 NUDT15Q9NV35 164 aa18.01■□□□□ 0.47
VPS28-209ENST00000528142 LOC100509620A0A075B734 347 aa18■□□□□ 0.47
VPS28-209ENST00000528142 SULT1C2O00338 296 aa18■□□□□ 0.47
VPS28-209ENST00000528142 COX5BP10606 129 aa18■□□□□ 0.47
VPS28-209ENST00000528142 OR3A2P47893 321 aa18■□□□□ 0.47
VPS28-209ENST00000528142 EIF2B2P49770 351 aaKnown RBP18■□□□□ 0.47
VPS28-209ENST00000528142 RAB25P57735 213 aa18■□□□□ 0.47
VPS28-209ENST00000528142 DMRTC1Q5HYR2 192 aa18■□□□□ 0.47
VPS28-209ENST00000528142 RAB12Q6IQ22 244 aa18■□□□□ 0.47
VPS28-209ENST00000528142 FGD2Q7Z6J4 655 aa18■□□□□ 0.47
VPS28-209ENST00000528142 SNIP1Q8TAD8 396 aaKnown RBP18■□□□□ 0.47
VPS28-209ENST00000528142 DEDD2Q8WXF8 326 aa18■□□□□ 0.47
VPS28-209ENST00000528142 SEH1LQ96EE3 360 aa18■□□□□ 0.47
VPS28-209ENST00000528142 NOX3Q9HBY0 568 aa18■□□□□ 0.47
VPS28-209ENST00000528142 ZNHIT1O43257 154 aa18■□□□□ 0.47
VPS28-209ENST00000528142 IL18BPO95998 194 aa18■□□□□ 0.47
VPS28-209ENST00000528142 EDN3P14138 238 aa18■□□□□ 0.47
VPS28-209ENST00000528142 MPGP29372 298 aa18■□□□□ 0.47
VPS28-209ENST00000528142 SSBP1Q04837 148 aaKnown RBP18■□□□□ 0.47
VPS28-209ENST00000528142 KISS1Q15726 138 aa18■□□□□ 0.47
VPS28-209ENST00000528142 BTN2A1Q7KYR7 527 aa18■□□□□ 0.47
VPS28-209ENST00000528142 P4HA3Q7Z4N8 544 aa18■□□□□ 0.47
VPS28-209ENST00000528142 ACBD4Q8NC06 268 aa18■□□□□ 0.47
VPS28-209ENST00000528142 FAM46BQ96A09 425 aa18■□□□□ 0.47
VPS28-209ENST00000528142 ST6GAL2Q96JF0 529 aa18■□□□□ 0.47
VPS28-209ENST00000528142 TAS2R8Q9NYW2 309 aa18■□□□□ 0.47
VPS28-209ENST00000528142 TRAV6A0A075B6T7 132 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 RIPPLY1Q0D2K3 151 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 SFRP4Q6FHJ7 346 aaPredicted RBP17.99■□□□□ 0.47
VPS28-209ENST00000528142 OR1K1Q8NGR3 316 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 AQP3Q92482 292 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 SPSB4Q96A44 273 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 SARAFQ96BY9 339 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 SCPEP1Q9HB40 452 aa17.99■□□□□ 0.47
VPS28-209ENST00000528142 hCG_38984A0A1B0GV85 526 aa17.98■□□□□ 0.47
VPS28-209ENST00000528142 PDGFAP04085 211 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms