RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 GNMTQ14749 295 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 EMC2Q15006 297 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 TIGITQ495A1 244 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 ACSM3Q53FZ2 586 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 EIPR1Q53HC9 387 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CCNJQ5T5M9 372 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 OGFRL1Q5TC84 451 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 DEFB128Q7Z7B8 93 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 TRAPPC5Q8IUR0 188 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 WDFY1Q8IWB7 410 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MREGQ8N565 214 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 ZNF614Q8N883 585 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 C4orf32Q8N8J7 132 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MDS2Q8NDY4 140 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CCDC54Q8NEL0 328 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 OR51F2Q8NH61 342 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 PIGXQ8TBF5 258 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 FBXO25Q8TCJ0 367 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 NELFBQ8WX92 580 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 TOMM40LQ969M1 308 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 NTNG2Q96CW9 530 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CNRIP1Q96F85 164 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 CEP170P1Q96L14 293 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 NIPSNAP1Q9BPW8 284 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 SLC35A5Q9BS91 424 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MRPS26Q9BYN8 205 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 SPHK2Q9NRA0 654 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 INIPQ9NRY2 104 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 AGPAT4Q9NRZ5 378 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 GID8Q9NWU2 228 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CLN6Q9NWW5 311 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CCDC59Q9P031 241 aaKnown RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 WRAP73Q9P2S5 460 aaPredicted RBP3.85□□□□□ -1.79
CD44-220ENST00000525688 GINS2Q9Y248 185 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 MTCH2Q9Y6C9 303 aa3.85□□□□□ -1.79
CD44-220ENST00000525688 CUL9Q8IWT3 2517 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 IGKV6-21A0A0C4DH24 114 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 TMEM150BA6NC51 233 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 OR5H15A6NDH6 313 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 OR2AT4A6NND4 320 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 J3QLI3 93 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 CXCL13O43927 109 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ALOX12BO75342 701 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 OAS1P00973 400 aaKnown RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 APOEP02649 317 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SERPINA5P05154 406 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 C8orf88P0DMB2 117 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SELEP16581 610 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 CD36P16671 472 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 S100A1P23297 94 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 RFC3P40938 356 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 YAP1P46937 504 aaKnown RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 HCAR3P49019 387 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SERPINB8P50452 374 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 CDK9P50750 372 aaKnown RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 CAV2P51636 162 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 CRIP2P52943 208 aaPredicted RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 ABCE1P61221 599 aaKnown RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 PSME3P61289 254 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ASAH1Q13510 395 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 FLOT2Q14254 428 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ARL6IP1Q15041 203 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SLC9A3R2Q15599 337 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 TMEM176BQ3YBM2 270 aaPredicted RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 SPIN3Q5JUX0 258 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 MEDAGQ5VYS4 303 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 LCLAT1Q6UWP7 414 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ZNF730Q6ZMV8 503 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 LYG2Q86SG7 212 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 MYPOPQ86VE0 399 aaPredicted RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 OR9A4Q8NGU2 314 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 OR2T6Q8NHC8 308 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ZPLD1Q8TCW7 415 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ACTRT1Q8TDG2 376 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 IFT81Q8WYA0 676 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 ALKBH3Q96Q83 286 aaPredicted RBP3.84□□□□□ -1.79
CD44-220ENST00000525688 LXNQ9BS40 222 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 CABLES2Q9BTV7 478 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 PARVBQ9HBI1 364 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 XPNPEP1Q9NQW7 623 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 MCUBQ9NWR8 336 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 HRASLS2Q9NWW9 162 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SDHAF2Q9NX18 166 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SLC25A37Q9NYZ2 338 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 KCNIP3Q9Y2W7 256 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 MUC3AQ02505 3323 aa3.84□□□□□ -1.79
CD44-220ENST00000525688 SIP14410 1827 aa3.84□□□□□ -1.8
CD44-220ENST00000525688 MYH9P35579 1960 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 TRAV8-7A0A075B6U6 113 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 IGHV3-38A0A0C4DH36 116 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 KIR2DL5BA0A0G2JN68 375 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 KIR2DL5BA0A0G2JPC4 375 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 A0A1B0GU03 582 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SEC14L6B5MCN3 397 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 F5H768 121 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 H3BMQ9 156 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 LAD1O00515 517 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SLC9A3R1O14745 358 aaPredicted RBP3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms