RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OR56B2PQ8NGI1 322 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 OR52I1Q8NGK6 324 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 HAVCR2Q8TDQ0 301 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 C18orf12Q96KH6 178 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 JAM3Q9BX67 310 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 ABCB9Q9NP78 766 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 G6PC2Q9NQR9 355 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 GNG8Q9UK08 70 aa12.11□□□□□ -0.47
NUP54-216ENST00000514901 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.1□□□□□ -0.47
NUP54-216ENST00000514901 EFCAB10A6NFE3 127 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 VWC2LB2RUY7 222 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 RNF223E7ERA6 249 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 IFNL4K9M1U5 179 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 LILRA1O75019 489 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 MTRF1O75570 445 aaKnown RBP12.1□□□□□ -0.47
NUP54-216ENST00000514901 RPP14O95059 124 aaKnown RBP12.1□□□□□ -0.47
NUP54-216ENST00000514901 VHLP40337 213 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 NR4A2P43354 598 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 MAP2K3P46734 347 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 MRPL28Q13084 256 aaKnown RBP12.1□□□□□ -0.47
NUP54-216ENST00000514901 MED21Q13503 144 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 OR8G1Q15617 311 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 C6orf52Q5T4I8 152 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 LHFPL3Q86UP9 236 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 SYS1Q8N2H4 156 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 PLPP7Q8NBV4 271 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 CCDC54Q8NEL0 328 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 RORBQ92753 470 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 YIPF5Q969M3 257 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 ERGIC1Q969X5 290 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 COX4I2Q96KJ9 171 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 OR2V2Q96R30 315 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 ALG8Q9BVK2 526 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 PLCXD1Q9NUJ7 323 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 GTF2A1LQ9UNN4 478 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 MYRFQ9Y2G1 1151 aa12.1□□□□□ -0.47
NUP54-216ENST00000514901 LYNX1G3V0Z9 82 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 MLNRO43193 412 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 CDC14BO60729 498 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 RP2O75695 350 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 CST4P01036 141 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 IGLV3-1P01715 115 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 RPSAP08865 295 aaKnown RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 INHBBP09529 407 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 LYNX1P0DP58 116 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 USF1P22415 310 aaPredicted RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 CA6P23280 308 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 GNALP38405 381 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 CD200P41217 278 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 PRSS12P56730 875 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 OR12D2P58182 307 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 LOXL1Q08397 574 aaPredicted RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 MFGE8Q08431 387 aaPredicted RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 TP53I3Q53FA7 332 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 ZBTB37Q5TC79 503 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 FDX2Q6P4F2 183 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 IZUMO2Q6UXV1 221 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 KRT74Q7RTS7 529 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 COMMD2Q86X83 199 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 CATSPERDQ86XM0 798 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 OR51E1Q8TCB6 317 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 ITLN1Q8WWA0 313 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 TIMD4Q96H15 378 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 MEGF10Q96KG7 1140 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 LYZL4Q96KX0 146 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 GPR84Q9NQS5 396 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 ZNF275Q9NSD4 429 aaPredicted RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 CHCHD3Q9NX63 227 aaKnown RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 ERVK13-1Q9NX77 482 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 CNOT2Q9NZN8 540 aaKnown RBP12.09□□□□□ -0.47
NUP54-216ENST00000514901 MPC1Q9Y5U8 109 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 ABCA1O95477 2261 aa12.09□□□□□ -0.47
NUP54-216ENST00000514901 DHRS7CA6NNS2 312 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 CLDN25C9JDP6 229 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 F5H5P2 479 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 H0YL77 283 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 J3QLW9 94 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 PPIHO43447 177 aaKnown RBP12.08□□□□□ -0.48
NUP54-216ENST00000514901 TTRP02766 147 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 HLA-DPB1P04440 258 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 PIPP12273 146 aaPredicted RBP12.08□□□□□ -0.48
NUP54-216ENST00000514901 ZNF19P17023 458 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 MYL12AP19105 171 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 GATA4P43694 442 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 GPR6P46095 362 aaPredicted RBP12.08□□□□□ -0.48
NUP54-216ENST00000514901 RIPPLY1Q0D2K3 151 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 TMPRSS11AQ6ZMR5 421 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 PEG10Q86TG7 708 aaKnown RBP12.08□□□□□ -0.48
NUP54-216ENST00000514901 SEMA6DQ8NFY4 1073 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 OR10AD1Q8NGE0 317 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 CCL17Q92583 94 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 GGHQ92820 318 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 RAB1CQ92928 201 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 TMEM80Q96HE8 168 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 C4orf36Q96KX1 117 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 ZNF649Q9BS31 505 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 ADAT1Q9BUB4 502 aaKnown RBP12.08□□□□□ -0.48
NUP54-216ENST00000514901 BPESC1Q9GZL8 116 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 ACOXLQ9NUZ1 547 aa12.08□□□□□ -0.48
NUP54-216ENST00000514901 C14orf119Q9NWQ9 140 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms