RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 CCDC74BQ96LY2 380 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 DEFB127Q9H1M4 99 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 TUBG2Q9NRH3 451 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 MRM2Q9UI43 246 aaKnown RBP11.38□□□□□ -0.59
USP53-209ENST00000514665 RNF212BA8MTL3 300 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 KLRC4-KLRK1H3BQV0 150 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 TNFSF11O14788 317 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 ACSM4P0C7M7 580 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 PRSS12P56730 875 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 CLDN15P56746 228 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 PIGPP57054 158 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 DHRS2Q13268 280 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 ABI3BPQ7Z7G0 1075 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 SPEM1Q8N4L4 309 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 OR10J5Q8NHC4 309 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 C22orf15Q8WYQ4 148 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 WFDC6Q9BQY6 131 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 SLC25A32Q9H2D1 315 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 ZNF768Q9H5H4 540 aaKnown RBP11.38□□□□□ -0.59
USP53-209ENST00000514665 MYOTQ9UBF9 498 aa11.38□□□□□ -0.59
USP53-209ENST00000514665 CTAG2O75638 210 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 GSTP1P09211 210 aaKnown RBP11.37□□□□□ -0.59
USP53-209ENST00000514665 AADACP22760 399 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 CASP6P55212 293 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 HTD2P86397 168 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 CEACAM16Q2WEN9 425 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ZNF468Q5VIY5 522 aaPredicted RBP11.37□□□□□ -0.59
USP53-209ENST00000514665 PWWP2BQ6NUJ5 590 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TMEM91Q6ZNR0 172 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TMEM52Q8NDY8 209 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 OR10AC1Q8NH08 325 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 REEP6Q96HR9 211 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 MENTQ9BUN1 341 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 PLEKHF2Q9H8W4 249 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 HDGFL3Q9Y3E1 203 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 A8MXE2 369 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 K7EQS6 105 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 SPINT1O43278 529 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 HPXP02790 462 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TNFSF4P23510 183 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 CD96P40200 585 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ANKRD16Q6P6B7 361 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 FER1L6-AS2Q96M78 137 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TCEAL7Q9BRU2 100 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 IGHV1OR21-1A0A087WYE8 117 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ARGFXA6NJG6 315 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ALG1L2C9J202 215 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 H3BP45 60 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 NDUFA6P56556 154 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 CCL7P80098 99 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ADIRFQ15847 76 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ZNF141Q15928 474 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 CLLU1Q5K131 121 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 LCN15Q6UWW0 184 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TMEM123Q8N131 208 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 FBXL14Q8N1E6 418 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 TMEM229BQ8NBD8 167 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ZNF764Q96H86 408 aaPredicted RBP11.37□□□□□ -0.59
USP53-209ENST00000514665 TWSG1Q9GZX9 223 aa11.37□□□□□ -0.59
USP53-209ENST00000514665 ANKUB1A6NFN9 424 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 DCTN6O00399 190 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 LANCL1O43813 399 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 IGHA1P01876 353 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 TBPP20226 339 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 OR2B8PP59922 312 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 RPP30P78346 268 aaKnown RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 TFF2Q03403 129 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 HMGN3Q15651 99 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 C20orf196Q8IYI0 205 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 ZNF808Q8N4W9 903 aaPredicted RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 C2orf50Q96LR7 162 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 VSTM2LQ96N03 204 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 ZNF230Q9UIE0 474 aaPredicted RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 POLEQ07864 2286 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 TMEM272A0A1B0GTI8 110 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 GREM1O60565 184 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 INHBBP09529 407 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 F2RL1P55085 397 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 TMEM128Q5BJH2 165 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 RBMS3Q6XE24 437 aaKnown RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 WDSUB1Q8N9V3 476 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 OR1S2Q8NGQ3 325 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 ARHGAP5-AS1Q96IT6 56 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 EPPINO95925 133 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 AKR1C3P42330 323 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 HAAOP46952 286 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 PPP1R1AQ13522 171 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 SPANXN5Q5MJ07 72 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 GUSBP11Q6P575 273 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 C6orf15Q6UXA7 325 aaPredicted RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 GVQW1Q8N7I0 195 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 NPEPL1Q8NDH3 523 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 OR52N4Q8NGI2 321 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 UBALD1Q8TB05 177 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 RAB9BQ9NP90 201 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 PPP1R3CQ9UQK1 317 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 SIRT4Q9Y6E7 314 aaPredicted RBP11.36□□□□□ -0.59
USP53-209ENST00000514665 RFPL4AA6NLU0 287 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 RFPL4AL1F8VTS6 287 aa11.36□□□□□ -0.59
USP53-209ENST00000514665 SSSCA1O60232 199 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms