RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 ZNF488Q96MN9 340 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 RAB1BQ9H0U4 201 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 OR51B5Q9H339 312 aa4.67□□□□□ -1.66
NUP54-215ENST00000514313 IGKV1-27A0A075B6S5 117 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 KRBOX1C9JBD0 128 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 NDUFC2-KCTD14E9PQ53 114 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 M0QX08 132 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 NEMFO60524 1076 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 SMC2O95347 1197 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 RHOCP08134 193 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 CCL2P13500 99 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 MAGP20916 626 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 TNNC1P63316 161 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 CRADDP78560 199 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 Q6ZR03 302 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 ST13P4Q8IZP2 240 aaPredicted RBP4.66□□□□□ -1.66
NUP54-215ENST00000514313 SYS1Q8N2H4 156 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 OR51A7Q8NH64 312 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 FLYWCH2Q96CP2 140 aaKnown RBP4.66□□□□□ -1.66
NUP54-215ENST00000514313 RDH12Q96NR8 316 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 ZNF382Q96SR6 550 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 UTP23Q9BRU9 249 aaKnown RBP4.66□□□□□ -1.66
NUP54-215ENST00000514313 SLC38A10Q9HBR0 1119 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 HES2Q9Y543 173 aa4.66□□□□□ -1.66
NUP54-215ENST00000514313 GPATCH8Q9UKJ3 1502 aaKnown RBP4.66□□□□□ -1.66
NUP54-215ENST00000514313 K7EN84 100 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 RAD51BO15315 384 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 YIF1AO95070 293 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 APOA1P02647 267 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 GNRHRP30968 328 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 POLR2IP36954 125 aaKnown RBP4.65□□□□□ -1.67
NUP54-215ENST00000514313 RPL31P62899 125 aaKnown RBP4.65□□□□□ -1.67
NUP54-215ENST00000514313 ST3GAL4Q11206 333 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 VAMP3Q15836 100 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 Q6P435 159 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 Q6ZVH6 145 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 RBM45Q8IUH3 476 aaKnown RBP4.65□□□□□ -1.67
NUP54-215ENST00000514313 ENTHD1Q8IYW4 607 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 RXFP4Q8TDU9 374 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 NEURL3Q96EH8 262 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 TOLLIPQ9H0E2 274 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 ARV1Q9H2C2 271 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 CSNK1G1Q9HCP0 422 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 TREX1Q9NSU2 369 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 DDX19AQ9NUU7 478 aaKnown RBP4.65□□□□□ -1.67
NUP54-215ENST00000514313 RBFOX1Q9NWB1 397 aaKnown RBP4.65□□□□□ -1.67
NUP54-215ENST00000514313 PSG11Q9UQ72 335 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 SIGLEC9Q9Y336 463 aa4.65□□□□□ -1.67
NUP54-215ENST00000514313 A0A0A6YYD5 115 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 LINC00854A0A1B0GVQ3 168 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TMEM223A0PJW6 202 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TVP23AA6NH52 213 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 LINC01619G3V211 115 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 SOCS1O15524 211 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 RNF113AO15541 343 aaKnown RBP4.64□□□□□ -1.67
NUP54-215ENST00000514313 ALOX12BO75342 701 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TTC4O95801 387 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 UCNP55089 124 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TAS2R60P59551 318 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TAL2Q16559 108 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 UBE2SQ16763 222 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 C18orf21Q32NC0 220 aaPredicted RBP4.64□□□□□ -1.67
NUP54-215ENST00000514313 MPV17L2Q567V2 206 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 SAXO2Q658L1 398 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 KRTAP5-11Q6L8G4 156 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 Q8N9L7 120 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 OR4K5Q8NGD3 323 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 ZNF414Q96IQ9 312 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 KCNS1Q96KK3 526 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 FGF23Q9GZV9 251 aaPredicted RBP4.64□□□□□ -1.67
NUP54-215ENST00000514313 ZNF302Q9NR11 478 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 ZNRD1Q9P1U0 126 aa4.64□□□□□ -1.67
NUP54-215ENST00000514313 TRAV8-7A0A075B6U6 113 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 IGKV6D-41A0A0C4DH26 115 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 RAB19A4D1S5 217 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 SEC14L6B5MCN3 397 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 B4GALT5O43286 388 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 FOXH1O75593 365 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 SERPINB7O75635 380 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 SC5DO75845 299 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 PTHP01270 115 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 BGNP21810 368 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 LOXP28300 417 aaPredicted RBP4.63□□□□□ -1.67
NUP54-215ENST00000514313 MLF1P58340 268 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 SLC35A1P78382 337 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 KDSRQ06136 332 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 IFFO1Q0D2I5 559 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 STEAP4Q687X5 459 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 APOBEC3HQ6NTF7 200 aaKnown RBP4.63□□□□□ -1.67
NUP54-215ENST00000514313 SLC16A13Q7RTY0 426 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 WDR86Q86TI4 376 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 TCAIMQ8N3R3 496 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 OR4D6Q8NGJ1 314 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 OR6N2Q8NGY6 317 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 RERGQ96A58 199 aaPredicted RBP4.63□□□□□ -1.67
NUP54-215ENST00000514313 CYYR1Q96J86 154 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 NDFIP1Q9BT67 221 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 GGTLC1Q9BX51 225 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 NACAE9PAV3 2078 aa4.63□□□□□ -1.67
NUP54-215ENST00000514313 GOLGA8JA6NMD2 632 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms