RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 IGHV3-13P01766 116 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 IGHV4-39P01824 125 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 ZNF12P17014 697 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 CCR9P51686 369 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 SPATA46Q5T0L3 261 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 FDX2Q6P4F2 183 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 COMMD2Q86X83 199 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 SVOPQ8N4V2 548 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 MAPK1IP1LQ8NDC0 245 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 CMBLQ96DG6 245 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 REEP6Q96HR9 211 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 TRIM36Q9NQ86 728 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 ACOXLQ9NUZ1 547 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 BABAM2Q9NXR7 383 aa17.25■□□□□ 0.35
USP53-208ENST00000514305 IGLV3-9A0A075B6K5 115 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 CD8AP01732 235 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 UBCP0CG48 685 aaKnown RBP17.24■□□□□ 0.35
USP53-208ENST00000514305 C21orf33P30042 268 aaPredicted RBP17.24■□□□□ 0.35
USP53-208ENST00000514305 TGM4P49221 684 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 WNT4P56705 351 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 NKPD1Q17RQ9 610 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 SNAI3Q3KNW1 292 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 TMEM244Q5VVB8 128 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 PRSS45Q7RTY3 260 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 ELMOD2Q8IZ81 293 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 SPRYD4Q8WW59 207 aaPredicted RBP17.24■□□□□ 0.35
USP53-208ENST00000514305 RORBQ92753 470 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 SPSB4Q96A44 273 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 MRPL37Q9BZE1 423 aaKnown RBP17.24■□□□□ 0.35
USP53-208ENST00000514305 SLC22A4Q9H015 551 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 COMMD4Q9H0A8 199 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 DYNLRB1Q9NP97 96 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 TAAR3PQ9P1P4 343 aa17.24■□□□□ 0.35
USP53-208ENST00000514305 KIAA1324LA8MWY0 1029 aaPredicted RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 PRR32B1ATL7 298 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 MAGEB4O15481 346 aaPredicted RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 TNFAIP8O95379 198 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 KITLGP21583 273 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 ERVS71-1P61550 626 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 ALKBH1Q13686 389 aaKnown RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 GK2Q14410 553 aaPredicted RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 GFOD2Q3B7J2 385 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 GLYATL3Q5SZD4 288 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 RPL22L1Q6P5R6 122 aaKnown RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 CATSPERDQ86XM0 798 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 NANOGP1Q8N7R0 232 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 CSNK2A3Q8NEV1 391 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 OR8B12Q8NGG6 310 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 PELI1Q96FA3 418 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 DIRC2Q96SL1 478 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 SYT3Q9BQG1 590 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 ZNF649Q9BS31 505 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 RHNO1Q9BSD3 238 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 ERVK-18Q9QC07 812 aa17.23■□□□□ 0.35
USP53-208ENST00000514305 PURGQ9UJV8 347 aaKnown RBP17.23■□□□□ 0.35
USP53-208ENST00000514305 A0A1B0GVI7 797 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 M0R233 179 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 SSX4O60224 188 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 NDUFS7O75251 213 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 CRLF1O75462 422 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 SRSF10O75494 262 aaKnown RBP17.22■□□□□ 0.35
USP53-208ENST00000514305 MAP2K3P46734 347 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 SMCPP49901 116 aaPredicted RBP17.22■□□□□ 0.35
USP53-208ENST00000514305 CHN2P52757 468 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 ZNF92Q03936 586 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 KRTAP1-1Q07627 177 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 PSG7Q13046 419 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 KCTD21Q4G0X4 260 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 OR2G2Q8NGZ5 317 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 SGK3Q96BR1 496 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 CACNG6Q9BXT2 260 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 ISG20L2Q9H9L3 353 aaKnown RBP17.22■□□□□ 0.35
USP53-208ENST00000514305 CLEC2DQ9UHP7 191 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 FZR1Q9UM11 496 aa17.22■□□□□ 0.35
USP53-208ENST00000514305 PLCE1Q9P212 2302 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 LOC390937A0A1W2PQ73 354 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 TMEM212A6NML5 194 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 TNFSF4P23510 183 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 PSMB10P40306 273 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 PPOXP50336 477 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 BDH1Q02338 343 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 SWI5Q1ZZU3 235 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 DOK3Q7L591 496 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 ZNF676Q8N7Q3 588 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 GATAD2BQ8WXI9 593 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 RAB1BQ9H0U4 201 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 G6PC2Q9NQR9 355 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 ZDHHC8Q9ULC8 765 aa17.21■□□□□ 0.35
USP53-208ENST00000514305 TRBV2A0A0J9YWF9 115 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 ANKRD30BLA7E2S9 258 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 IQCF6A8MYZ5 107 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 PNPP00491 289 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 MPV17P39210 176 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 MVKQ03426 396 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 MFGE8Q08431 387 aaPredicted RBP17.2■□□□□ 0.34
USP53-208ENST00000514305 MZT1Q08AG7 82 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 HLXQ14774 488 aaPredicted RBP17.2■□□□□ 0.34
USP53-208ENST00000514305 SPHARQ15513 63 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 FAM209AQ5JX71 171 aa17.2■□□□□ 0.34
USP53-208ENST00000514305 OR2G6Q5TZ20 316 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms