RNA–Protein interactions for RNA: ENST00000513818.1

TOPBP1-209, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 1 (best)

Gene TOPBP1, Length 898 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-209ENST00000513818 FKBP14Q9NWM8 211 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 TREM2Q9NZC2 230 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 CNOT2Q9NZN8 540 aaKnown RBP8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 ERVK-18Q9QC07 812 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 NUFIP1Q9UHK0 495 aaKnown RBP8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 EXOSC1Q9Y3B2 195 aaKnown RBP8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 PCDHGB1Q9Y5G3 927 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 PMF1-BGLAPU3KQ54 211 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 CELSR1Q9NYQ6 3014 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 CCDC168Q8NDH2 2452 aa8.35□□□□□ -1.07
TOPBP1-209ENST00000513818 PNMA8CA0A1B0GUJ8 204 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 LOC107986453A0A1B0GWG9 222 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 PLSCR5A0PG75 271 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 IRGMA1A4Y4 181 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 A6NIN4 97 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 C17orf100A8MU93 164 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 IQCF6A8MYZ5 107 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 H7C417 338 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 SSX4O60224 188 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 PF4P02776 101 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 HPXP02790 462 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 CDK1P06493 297 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 HTR1AP08908 422 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 DCKP27707 260 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 DCTDP32321 178 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 EVX1P49640 407 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 GSK3AP49840 483 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 CCL8P80075 99 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 CARTPTQ16568 116 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 LIAT1Q6ZQX7 453 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 TGIF2LYQ8IUE0 185 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 RDH10Q8IZV5 341 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 KLHL36Q8N4N3 616 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 ZNF525Q8N782 197 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 OR2Z1Q8NG97 314 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 OR52H1Q8NGJ2 320 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 OR2G2Q8NGZ5 317 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 OR10AC1Q8NH08 325 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 GATAD2BQ8WXI9 593 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 SPSB4Q96A44 273 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 MBD6Q96DN6 1003 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 ELMOD3Q96FG2 381 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 ADAT1Q9BUB4 502 aaKnown RBP8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 JAM3Q9BX67 310 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 GSX2Q9BZM3 304 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 CCDC90BQ9GZT6 254 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 Q9H521 79 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 MOB1AQ9H8S9 216 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 INPP5EQ9NRR6 644 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 SCN3BQ9NY72 215 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 GPR160Q9UJ42 338 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 SNX5Q9Y5X3 404 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 CACNG2Q9Y698 323 aa8.34□□□□□ -1.07
TOPBP1-209ENST00000513818 MAP1AP78559 2803 aaPredicted RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 A0A1B0GTI1 187 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 F5H5P2 479 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 MYL12BO14950 172 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 DENRO43583 198 aaKnown RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CDC14BO60729 498 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 IGLV3-1P01715 115 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 MT-ND5P03915 603 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 BMP4P12644 408 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 FAHP16930 419 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CA6P23280 308 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CRHBPP24387 322 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 MAP2K4P45985 399 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CDH15P55291 814 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 SLC35A2P78381 396 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 HOXA4Q00056 320 aaPredicted RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CHD3Q12873 2000 aaKnown RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 C1orf174Q8IYL3 243 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 ELMOD2Q8IZ81 293 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 SYS1Q8N2H4 156 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 WFDC11Q8NEX6 87 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 OR8G5Q8NG78 346 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 ITLN1Q8WWA0 313 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 TRMT61AQ96FX7 289 aaKnown RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 PDCD1LG2Q9BQ51 273 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 PAPOLGQ9BWT3 736 aaKnown RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 RAB1BQ9H0U4 201 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 SP140LQ9H930 580 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 FRRS1LQ9P0K9 344 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 EDARQ9UNE0 448 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 CAB39Q9Y376 341 aaPredicted RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 RHBDD3Q9Y3P4 386 aa8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 SIRT4Q9Y6E7 314 aaPredicted RBP8.33□□□□□ -1.08
TOPBP1-209ENST00000513818 PRRC2AP48634 2157 aaKnown RBP8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 ANK3Q12955 4377 aaKnown RBP8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 A0A0U1RQV5 110 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 A0A1B0GVI7 797 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 TRIM64A6NGJ6 449 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 TRIM64BA6NI03 449 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 SYT7O43581 403 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 RGS10O43665 173 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 TACSTD2P09758 323 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 CCDC159P0C7I6 412 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 DAOP14920 347 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 CPEP16870 476 aa8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 EEF1B2P24534 225 aaKnown RBP8.32□□□□□ -1.08
TOPBP1-209ENST00000513818 GBX2P52951 348 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms