RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 FAM57BQ71RH2 274 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 CMTM4Q8IZR5 234 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TEX29Q8N6K0 151 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 OR10G3Q8NGC4 313 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 OR52E1Q8NGJ3 308 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 OR51F2Q8NH61 342 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PIGCQ92535 297 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 MEIKINA0A087WXM9 373 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TMEM129A0AVI4 362 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TEAD1P28347 426 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PRRX1P54821 245 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF85Q03923 595 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF343Q6P1L6 599 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 SH2D5Q6ZV89 423 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 NANOGP1Q8N7R0 232 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 NKAIN3Q8N8D7 197 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TMEM255BQ8WV15 326 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 PINX1Q96BK5 328 aaKnown RBP7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 MYADMQ96S97 322 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 DDA1Q9BW61 102 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM206AQ9NX38 181 aa7.94□□□□□ -1.14
LIMCH1-218ENST00000513024 TGIF2-C20orf24A0A0A6YYL0 155 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 IDSB3KWA1 339 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GCGP01275 180 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GYPAP02724 150 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NPY1RP25929 384 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 BSGP35613 385 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SLC6A11P48066 632 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NTHL1P78549 312 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CDKN3Q16667 212 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF468Q5VIY5 522 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF813Q6ZN06 617 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 RBM45Q8IUH3 476 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ETFBKMTQ8IXQ9 262 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SPPL3Q8TCT6 385 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM216AQ8WUB2 273 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SLCO4A1Q96BD0 722 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FOXJ2Q9P0K8 574 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 A0A0B4J293 547 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 DRGXA6NNA5 263 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ABCD4O14678 606 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NXPH3O95157 252 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GLI4P10075 376 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GPX2P18283 190 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CCL11P51671 97 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM3AP98173 230 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 AQP6Q13520 282 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 MBOAT2Q6ZWT7 520 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CDC20BQ86Y33 519 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 MBOAT4Q96T53 435 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF430Q9H8G1 570 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 COL2A1P02458 1487 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 MICAL3Q7RTP6 2002 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NCBP2LA6PVI3 153 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ANKRD30BLA7E2S9 258 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 HSPB6O14558 160 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CPMP14384 443 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 RPA2P15927 270 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SLC6A1P30531 599 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CLDN2P57739 230 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SRSF9Q13242 221 aaKnown RBP eCLIP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ERV3-1Q14264 604 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 LTB4RQ15722 352 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 AGBL4Q5VU57 503 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 WBP2NLQ6ICG8 309 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 DLEU7Q6UYE1 221 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 TSEN54Q7Z6J9 526 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 LYG2Q86SG7 212 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GLCCI1Q86VQ1 547 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ADAMTS17Q8TE56 1095 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 GPR37O15354 613 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 YIF1AO95070 293 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CDS2O95674 445 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NRASP01111 189 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 HRASP01112 189 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 KRASP01116 189 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FURINP09958 794 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 PIPP12273 146 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FCGR2AP12318 317 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 MTCP1P56278 107 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 HLA-DRB5Q30154 266 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 HNRNPA1L2Q32P51 320 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SYT14P1Q58G82 188 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FAM26DQ5JW98 314 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 SPANXN5Q5MJ07 72 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 DTWD2Q8NBA8 298 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CPEB3Q8NE35 698 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 EMG1Q92979 244 aaKnown RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ISL2Q96A47 359 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 ZNF775Q96BV0 537 aaPredicted RBP7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 OR8B4Q96RC9 309 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 MAP1LC3CQ9BXW4 147 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 NDUFB11Q9NX14 153 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 TREM2Q9NZC2 230 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 CLEC1BQ9P126 229 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 LIPGQ9Y5X9 500 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 FLVCR1Q9Y5Y0 555 aa7.93□□□□□ -1.14
LIMCH1-218ENST00000513024 KNTC1P50748 2209 aa7.92□□□□□ -1.14
LIMCH1-218ENST00000513024 NINQ8N4C6 2090 aa7.92□□□□□ -1.14
LIMCH1-218ENST00000513024 GREB1LQ9C091 1923 aaPredicted RBP7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms